ViewGene
Locus Name:
GeneID:
Location:

GeneID:3442
TrivialName: PA14_29240
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_29240
PAO1 Ortholog Locus:PA2698
Sequence Length:681
Protein Length:226
Start: 2530609
Stop: 2531289
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06086.1|AE004698_2 (AE004698) probable hydrolase [Pseudomonas aeruginosa PAO1]
Identities = 226/226 (100%), Positives = 226/226 (100%)
Sequence:
ATGAGCCACTATCTCGAAGTTCTAACTCCGCAGAACAGCCAGATCATCTTCATCGACCAGCAGCCACAGATG
GCATTTGGTGTACAGTCCATCGATCGCCAGACGCTGAAGAACAACGTAGTGGGCCTGGCCAAGGCGGCGAAG
GTATTCGACATCCCGGTCACCATCACCACGGTGGAAACCGACAGCTTCTCCGGCCCGACCTATCCGGAGCTG
CTGGCGGTGTTCCCCGAGCAGAAGATTCTCGAACGCACCTCGATGAACTCCTGGGACGACCAGAACGTGCGC
GACTCGCTGGCCGCCGCGGGCCGCAAGAAGGTCGTGGTCGCCGGGCTGTGGACCGAGGTCTGCAACACCACC
TTCGCCCTCTGCGCCATGCTCGAGGGCGGCTACGAGATCTACATGGTGGCCGATGCCTCGGGCGGCACCTCC
AGCGACGCCCACAAGTACGCCATGGACCGCATGGTCCAGGCCGGCGTGGTACCGGTGACCTGGCAGCAGGTC
CTGCTGGAGTGGCAGCGCGACTGGGCCCGCCGGGATACCTACGACGCCGTGATGGCCATCGCCAAGGAGCAT
TCCGGGGCCTACGGCATGGGCGTGGACTACGCCTACACCATGGTGCACAAGGCGCCCGAGCGGGTGACCCAC
GGCGAACGCATCGGCCCGAATCCGGCCAAGTGA
Translation:
MSHYLEVLTPQNSQIIFIDQQPQMAFGVQSIDRQTLKNNVVGLAKAAKVFDIPVTITTVETDSFSGPTYPEL
LAVFPEQKILERTSMNSWDDQNVRDSLAAAGRKKVVVAGLWTEVCNTTFALCAMLEGGYEIYMVADASGGTS
SDAHKYAMDRMVQAGVVPVTWQQVLLEWQRDWARRDTYDAVMAIAKEHSGAYGMGVDYAYTMVHKAPERVTH
GERIGPNPAK*
AnnotationID:3450GeneID:3442
AnnotatorUID: danlee
Modification Date/Time: 2006-01-27 13:01:29
Gene Name:
Confidence Code:3
GeneProduct:putative hydrolase
Cell Localization:()
Synonyms:PA2698
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:cd01012
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAL17792.1|AF361470_13 (AF361470) putative hydrolase [Rhizobium leguminosarum bv.
           trifolii]
          Length = 229

 Score =  381 bits (978), Expect = e-105
 Identities = 190/229 (82%), Positives = 204/229 (89%), Gaps = 3/229 (1%)

>gb|AAK64860.1| (AE007213) putative hydrolase [Sinorhizobium meliloti]
          Length = 229

 Score =  381 bits (978), Expect = e-105
 Identities = 188/226 (83%), Positives = 205/226 (90%), Gaps = 4/226 (1%)

>gb|AAN69570.1|AE016590_10 (AE016788) hydrolase, isochorismatase family [Pseudomonas putida
           KT2440]
          Length = 228

 Score =  369 bits (947), Expect = e-102
 Identities = 175/222 (78%), Positives = 194/222 (87%)








 
Structural Features:
cd01012, YcaC_related, YcaC related amidohydrolases
CD-Length = 157 residues,  99.4% aligned
Score =  190 bits (483), Expect = 1e-49







   
Genomic Context:






   
Comment:


















    ReferenceID:6887




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24029




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36327




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3442_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3442
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5498
                           PA2698_tr
                           translation of PA2698
                           226
                           99.99
                           99.99
                           0
                           1181.0
     

     
     
153512
                           gb|AAG06086.1|AE004698_2
                           (AE004698) probable hydrolase [Pseudomonas aeruginosa PAO1]
                           226
                           99.99
                           99.99
                           0
                           1181.0
     

     
     
153513
                           gb|AAL17792.1|AF361470_13
                           (AF361470) putative hydrolase [Rhizobium leguminosarum bv. trifolii]
                           229
                           82.96
                           89.08
                           3
                           981.0
     

     
     
153514
                           gb|AAK64860.1|
                           (AE007213) putative hydrolase [Sinorhizobium meliloti]
                           230
                           82.60
                           90.00
                           5
                           981.0
     

     
     
153515
                           gb|AAL44782.1|
                           (AE009329) hydrolase [Agrobacterium tumefaciens str. C58 (U. Washington)]
                           230
                           81.30
                           89.13
                           5
                           964.0
     

     






      

          
GC ORFID: 46444How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2698Glimmer Score: 

          
Start: 2423317Stop: 2422637

          
Length: 681


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2698 translation of PA2698Homolog Bit Score 459.0

          
Other Homologs:  t_PA2698 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCCACTATCTCGAAGTTCTAACTCCGCAGAACAGCCAGATCATCTTCATCGACCAGCAGCCACAGATG 
GCATTTGGTGTACAGTCCATCGATCGCCAGACGCTGAAGAACAACGTAGTGGGCCTGGCCAAGGCGGCGAAG 
GTATTCGACATCCCGGTCACCATCACCACGGTGGAAACCGACAGCTTCTCCGGCCCGACCTATCCGGAGCTG 
CTGGCGGTGTTCCCCGAGCAGAAGATTCTCGAACGCACCTCGATGAACTCCTGGGACGACCAGAACGTGCGC 
GACTCGCTGGCCGCCGCGGGCCGCAAGAAGGTCGTGGTCGCCGGGCTGTGGACCGAGGTCTGCAACACCACC 
TTCGCCCTCTGCGCCATGCTCGAGGGCGGCTACGAGATCTACATGGTGGCCGATGCCTCGGGCGGCACCTCC 
AGCGACGCCCACAAGTACGCCATGGACCGCATGGTCCAGGCCGGCGTGGTACCGGTGACCTGGCAGCAGGTC 
CTGCTGGAGTGGCAGCGCGACTGGGCCCGCCGGGATACCTACGACGCCGTGATGGCCATCGCCAAGGAGCAT 
TCCGGGGCCTACGGCATGGGCGTGGACTACGCCTACACCATGGTGCACAAGGCGCCCGAGCGGGTGACCCAC 
GGCGAACGCATCGGCCCGAATCCGGCCAAGTGA