ViewGene
Locus Name:
GeneID:
Location:

GeneID:3441
TrivialName: PA14_35080
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_35080
PAO1 Ortholog Locus:PA2280
Sequence Length:693
Protein Length:230
Start: 3124173
Stop: 3123481
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05668.1|AE004653_11 (AE004653) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 228/230 (99%), Positives = 229/230 (99%)
Sequence:
ATGTCCGAACAACTACCCAACCTCGATCCCGCGCTGCTCGGCGACCCGCCCCCCGTCTCCGGGCACAGGCCG
CGCATCCTCCTGCTCTACGGCTCGACCCGCGAGCGCTCCTTCAGCCGCCTGCTGGTGCTGGAGGCCGCACGC
CTGCTCGAACGCTTCGGCGCCGAAACGCGGATTTTCGACCCTTCCGGGCTGCCATTGCCCGACGATGCACCG
CTGGAGCATCCCAAGGTCCGCGAGTTGCGCGACCTGGTGCTGTGGTCGGAAGGCCAGGTCTGGTGCTCGCCC
GAACGCCACGGTGCGCTGTCCGCGGTATTCAAGGCGCAGATCGACTGGATTCCCCTGGCACTCGGGGCGGTG
CGCCCGACCCAGGGCAAGACCCTGGCGCTGATGCAGGTCTGCGGCGGCTCGCAGTCGTTCAACGTGGTCAAC
CAGTTGCGCGTGCTGGGTCGCTGGATGCGCATGTTCACCATCCCCAACCAGTCCTCGGTTCCCAAGGCCTAC
CTGGAGTTCGACGAAGCGGGCCGGATGAAGCCATCGCCCTACTACGACCGGGTGGTCGACGTGATGGAGGAG
TTGTTCAAGTTCACCCTGCTCCTGCGCGAGCGCACGGACTTCCTGGTGGACCGCTATTCGGAGCGCAAGGAA
AGCGCCGAGCAGCTTTCCGCGCGGGTCGACCAGCGTTCGCTCTGA
Translation:
MSEQLPNLDPALLGDPPPVSGHRPRILLLYGSTRERSFSRLLVLEAARLLERFGAETRIFDPSGLPLPDDAP
LEHPKVRELRDLVLWSEGQVWCSPERHGALSAVFKAQIDWIPLALGAVRPTQGKTLALMQVCGGSQSFNVVN
QLRVLGRWMRMFTIPNQSSVPKAYLEFDEAGRMKPSPYYDRVVDVMEELFKFTLLLRERTDFLVDRYSERKE
SAEQLSARVDQRSL*
AnnotationID:3449GeneID:3441
AnnotatorUID: diggins
Modification Date/Time: 2005-03-04 09:09:55
Gene Name:
Confidence Code:3
GeneProduct:putative arsenical resistance protein
Cell Localization:()
Synonyms:arsH
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(1) Adaptation, protection
Alternate Gene Product Name:putative flavoprotein
Functional Category Confidence Code:5
COGs:COG0431,pfam03358
Secondary Functional Category(ies):putative enzyme
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN68323.1|AE016466_8 (AE016784) arsH protein [Pseudomonas putida KT2440]
          Length = 233

 Score =  402 bits (1032), Expect = e-111
 Identities = 201/233 (86%), Positives = 213/233 (91%), Gaps = 3/233 (1%)

>gb|AAF69240.1|AF173880_3 (AF173880) ArsH-like protein [Acidithiobacillus ferrooxidans]
          Length = 240

 Score =  346 bits (888), Expect = 5e-95
 Identities = 172/237 (72%), Positives = 195/237 (82%), Gaps = 7/237 (2%)

>gb|AAL42495.1| (AE009108) arsenical resistance protein [Agrobacterium tumefaciens
           str. C58 (U. Washington)]
          Length = 236

 Score =  313 bits (801), Expect = 7e-85
 Identities = 150/214 (70%), Positives = 174/214 (81%)






 
Structural Features:
COG0431, COG0431, Predicted flavoprotein
CD-Length = 184 residues, 100.0% aligned
Score =  149 bits (377), Expect = 3e-37
Identities = 60/196 (30%), Positives = 86/196 (43%), Gaps = 15/196 (7%)

pfam03358, FMN_red, NADPH-dependent FMN reductase. 
CD-Length = 173 residues,  99.4% aligned
Score =  138 bits (348), Expect = 7e-34
Identities = 62/181 (34%), Positives = 85/181 (46%), Gaps = 16/181 (8%)






   
Genomic Context:






   
Comment:


















    ReferenceID:6885




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24027




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32501




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3441_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3441
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5497
                           PA2280_tr
                           translation of PA2280
                           230
                           99.13
                           99.56
                           0
                           1180.0
     

     
     
153488
                           gb|AAG05668.1|AE004653_11
                           (AE004653) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           230
                           99.13
                           99.56
                           0
                           1180.0
     

     
     
153489
                           gb|AAN68323.1|AE016466_8
                           (AE016784) arsH protein [Pseudomonas putida KT2440]
                           233
                           86.26
                           91.41
                           3
                           1035.0
     

     
     
153490
                           gb|AAN67544.1|AE016383_6
                           (AE016781) arsenical resistance protein ArsH, putative [Pseudomonas putida KT2440]
                           241
                           78.00
                           86.72
                           11
                           974.0
     

     
     
153491
                           emb|CAC18655.1|
                           (AJ271973) ArsH protein [Pseudomonas putida]
                           230
                           75.65
                           84.78
                           2
                           888.0
     

     






      

          
GC ORFID: 46443How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2280Glimmer Score: 

          
Start: 1829743Stop: 1830435

          
Length: 693


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2280 translation of PA2280Homolog Bit Score 459.0

          
Other Homologs:  t_PA2280 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCCGAACAACTACCCAACCTCGATCCCGCGCTGCTCGGCGACCCGCCCCCCGTCTCCGGGCACAGGCCG 
CGCATCCTCCTGCTCTACGGCTCGACCCGCGAGCGCTCCTTCAGCCGCCTGCTGGTGCTGGAGGCCGCACGC 
CTGCTCGAACGCTTCGGCGCCGAAACGCGGATTTTCGACCCTTCCGGGCTGCCATTGCCCGACGATGCACCG 
CTGGAGCATCCCAAGGTCCGCGAGTTGCGCGACCTGGTGCTGTGGTCGGAAGGCCAGGTCTGGTGCTCGCCC 
GAACGCCACGGTGCGCTGTCCGCGGTATTCAAGGCGCAGATCGACTGGATTCCCCTGGCACTCGGGGCGGTG 
CGCCCGACCCAGGGCAAGACCCTGGCGCTGATGCAGGTCTGCGGCGGCTCGCAGTCGTTCAACGTGGTCAAC 
CAGTTGCGCGTGCTGGGTCGCTGGATGCGCATGTTCACCATCCCCAACCAGTCCTCGGTTCCCAAGGCCTAC 
CTGGAGTTCGACGAAGCGGGCCGGATGAAGCCATCGCCCTACTACGACCGGGTGGTCGACGTGATGGAGGAG 
TTGTTCAAGTTCACCCTGCTCCTGCGCGAGCGCACGGACTTCCTGGTGGACCGCTATTCGGAGCGCAAGGAA 
AGCGCCGAGCAGCTTTCCGCGCGGGTCGACCAGCGTTCGCTCTGA