ViewGene
Locus Name:
GeneID:
Location:

GeneID:3440
TrivialName: PA14_39790
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_39790
PAO1 Ortholog Locus:PA1913
Sequence Length:681
Protein Length:226
Start: 3545631
Stop: 3546311
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05301.1|AE004617_5 (AE004617) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 224/226 (99%), Positives = 225/226 (99%)
Sequence:
ATGGCTTTCGATGCCGCCCGCTATGTCCACCGCTACTACGCCAGCCTGGCGCCCGCCCCGGGCAACGAATAC
CCGCGCCTGAGGGCCTGGGAGTACCTCTGGGAGTATGTCTGGGACCCCAGTCGCAGCTGGGACGACCTGACC
GCCCCCGAACAGCTCGACACCACCGCCCTGCACCTGGGTTTCTACCTGGCCAACTGGGGCATGTTCCGTGGC
TCCTCGGGACTGCTGCAGAACAGCAACCTGGACCTGATGAAAGCGCTGGCCCGGCAGCTCTTCAGCGGTGCC
GGAGCGGAACTCTTCGAGCTGTCCCTGGTGGATTTCGCCGGCAACGGCGCGCGCCTGGCGCACAACCGCAAG
CTGCTGGAAACGGTGCTCGGGTCGATGGATGCCCTCAGCAGCCGGGTGAGCTGGACCGACACCCTGAAGAGC
AAGATCCTGCTCGGCGTCTGGGGCGAGTTTCCCGCCCTCGACCGCCACTACCTGGCCGCCTGTCGCGCGCTG
TATCCACGCCGGGGCCTGACGAGCGTCAACGGCGGGACCCTCACCGCGCTGCACCGCCTGATCGGCGAAGAA
AGGCTGTCGTTCCCGCGCCTGGAGACCGCCCGCAAGGGGCTCCTCTACCCCACCGGGCGCCTGGCCGACATG
GCTTTCTTCCAGTACGGCCTGGAAAACGCCTGA
Translation:
MAFDAARYVHRYYASLAPAPGNEYPRLRAWEYLWEYVWDPSRSWDDLTAPEQLDTTALHLGFYLANWGMFRG
SSGLLQNSNLDLMKALARQLFSGAGAELFELSLVDFAGNGARLAHNRKLLETVLGSMDALSSRVSWTDTLKS
KILLGVWGEFPALDRHYLAACRALYPRRGLTSVNGGTLTALHRLIGEERLSFPRLETARKGLLYPTGRLADM
AFFQYGLENA*
AnnotationID:3448GeneID:3440
AnnotatorUID: diggins
Modification Date/Time: 2005-03-02 11:11:39
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA1913
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:6883




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24025




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3440
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5496
                           PA1913_tr
                           translation of PA1913
                           226
                           99.11
                           99.55
                           0
                           1182.0
     

     
     
153487
                           gb|AAG05301.1|AE004617_5
                           (AE004617) hypothetical protein PA1913 [Pseudomonas aeruginosa PAO1]
                           226
                           99.11
                           99.55
                           0
                           1182.0
     

     






      

          
GC ORFID: 46442How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1913Glimmer Score: 

          
Start: 1408280Stop: 1407600

          
Length: 681


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1913 translation of PA1913Homolog Bit Score 459.0

          
Other Homologs:  t_PA1913 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCTTTCGATGCCGCCCGCTATGTCCACCGCTACTACGCCAGCCTGGCGCCCGCCCCGGGCAACGAATAC 
CCGCGCCTGAGGGCCTGGGAGTACCTCTGGGAGTATGTCTGGGACCCCAGTCGCAGCTGGGACGACCTGACC 
GCCCCCGAACAGCTCGACACCACCGCCCTGCACCTGGGTTTCTACCTGGCCAACTGGGGCATGTTCCGTGGC 
TCCTCGGGACTGCTGCAGAACAGCAACCTGGACCTGATGAAAGCGCTGGCCCGGCAGCTCTTCAGCGGTGCC 
GGAGCGGAACTCTTCGAGCTGTCCCTGGTGGATTTCGCCGGCAACGGCGCGCGCCTGGCGCACAACCGCAAG 
CTGCTGGAAACGGTGCTCGGGTCGATGGATGCCCTCAGCAGCCGGGTGAGCTGGACCGACACCCTGAAGAGC 
AAGATCCTGCTCGGCGTCTGGGGCGAGTTTCCCGCCCTCGACCGCCACTACCTGGCCGCCTGTCGCGCGCTG 
TATCCACGCCGGGGCCTGACGAGCGTCAACGGCGGGACCCTCACCGCGCTGCACCGCCTGATCGGCGAAGAA 
AGGCTGTCGTTCCCGCGCCTGGAGACCGCCCGCAAGGGGCTCCTCTACCCCACCGGGCGCCTGGCCGACATG 
GCTTTCTTCCAGTACGGCCTGGAAAACGCCTGA