ViewGene
Locus Name:
GeneID:
Location:

GeneID:344
TrivialName: PA14_39650
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_39650
PAO1 Ortholog Locus:PA1922
Sequence Length:1962
Protein Length:653
Start: 3534841
Stop: 3532880
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05310.1|AE004618_4 (AE004618) probable TonB-dependent receptor [Pseudomonas aeruginosa PAO1]
Identities = 650/653 (99%), Positives = 650/653 (99%)
Sequence:
ATGACCCCCCATTCCTCCCCGCACCGTCTTCCTCCGCTGCGGCTGGCCCGCGCCGTGCCGTTCCTCTACCTG
CTTCCCTGCCTGGCGCTGGCCGCGCCGGTCGACCTGGAGCCGACGGTGGTCAGCGCCACCACTACCGAGCGC
AAGCTGCGCGACGCCCCGGCCAGCGTTTCGCTGATCGCCGCCGAGGACCTGCGGCGGCGCCCGGTGCGCGAC
CTGCAGGAAGCCCTGCGCGGTTCGGAAAGCCTGCAGTTCAACGGCGTCGGCATGTCCCGGCGGGGCATCAGC
GTTCGCGGCATGTCCAGCGAGCACACCCTGGTGCTGGTGGACGGCCAGCGGATCTCCACCTCGTCCGGGGCC
ATCGCCCATTCCGACTTCGACCTCGGCTGGGTGCCGGTGGAGAGCATCGAGCGCATCGAGGTGGTACGCGGA
CCGATGTCCTCGCTCTACGGTTCGGAAGCCCTCGGCGGAGTGGTGAACGTGATCACCCGGCGCGCCACCGAT
ACCTGGACGGGCAGCGGCCTGCTCGATGGCGGCGTGCGCGAGGACGGCCTCGGCGGGCAGAGCCACCAGCTC
GGCGCCTATCTCGCCGGGCCGCTGGTCCCCGGCAAGCTGGGCCTCGCCCTGAACGGCGAGAGCCGCCGCCAG
CAGGAAACCCCGGACGCCGACGAGCGCCGGCTCTCCGAGCTGGAAGGCGGCAACGCCGACAGCGGCGGGCTG
AACCTCAGTTGGACCCCGGACGACGCCCAGCGCATCGACCTCGGCCACCAGCGCGGGCGCGAACGACGCTGG
CGCAACAGCGAGACCGGGGGGCCGCGCTCGCGCTACTACGAGTCGCGCGACGTGATCGAACGCGAGCGCTGG
TCGCTCGCCCACAATGGCCAGTGGGACTGGGGCAGCAGCCAGCTGCGCACCTACCGCAACCGCCTGGAGCGG
CACAACGCGCGTTCCGACGGACAACCGCCGAGCAACCCGCAGCGCCTTACCGACAGCGTGGTCGACGGCCAC
CTCAGCGTGCCGGCCTTCGAGCGACATCTCTTCACCCTCGGCGGCGAATGGCGCAAGGAGGAACTGGAGGAT
CGCTCGGTGAATACCGCCGGCGACGCCAGCGCGCGACACAAGGCGTTGTTCCTGCAGGACGAGATCGCCTTC
GGCCCGGACTGGTCGCTGACCCTCGGCAGCCGCTTCGACAAGCACGAGGCGTTCGGCTGGGAAAGCAGTCCG
CGCCTGTACCTGCTGCACCACCTTTCCGATGCGCTGACCCTGCGCGCCGGCGTCGGCCGCGGCTACAAGGCG
CCGAGCCTGAAGCAGCTATCGCCGGAGTATGCGGCGGTCGGCGGCGGCGGGCGCTTCACTATCTACGGCAAT
CCCGACCTGAAGCCGGAGACCAATACGTCCTACGAACTGGGCGCCGACTACCAGGGCGACGGCTGGTCGCTG
AAGGGCACGGTGTTCGAGAACGATGTCCGCGACCTGATCCAGACCGTCTGCGTAGCGCGCTGCGGGGTGCGC
GGCGGCGAGATACGCAACTACGAGAACGTCGACAGGGCACGGATCCGCGGCCTCGAGCTGAGCGGCGGCGTG
GACCTGCCGGCGGACCTGCGCTGGGAACTCAACTACACCTACCTCGACGCGCGCAACCGCACCGCCGGCCAG
CGCCTCGGCGACCGCTCCcGGCACCTCGCCAACAGCCAATTGCGCTGGAGCCCCAATGCGCGCTTCAGCGCC
CAGTTGCGTACCGAATACGTCGGCAGCCAGGTGGCCTACAGCAGCAACGTCGGCTACGCCTTGCCGGCCTAC
AGCCTGTGGCACCTGGAGCTGAGCCAGAAACTCAGCGAGAACCTGACGCTGCGCGGCGGCATCGAGAACCTT
GGCGACCAGCGCCTGGCCGACGACGACACGCACTTCACCTATGCCGAACCTGGGCGGACCTTCCATCTCGGC
CTGGTGGCGAGCTTCTGA
Translation:
MTPHSSPHRLPPLRLARAVPFLYLLPCLALAAPVDLEPTVVSATTTERKLRDAPASVSLIAAEDLRRRPVRD
LQEALRGSESLQFNGVGMSRRGISVRGMSSEHTLVLVDGQRISTSSGAIAHSDFDLGWVPVESIERIEVVRG
PMSSLYGSEALGGVVNVITRRATDTWTGSGLLDGGVREDGLGGQSHQLGAYLAGPLVPGKLGLALNGESRRQ
QETPDADERRLSELEGGNADSGGLNLSWTPDDAQRIDLGHQRGRERRWRNSETGGPRSRYYESRDVIERERW
SLAHNGQWDWGSSQLRTYRNRLERHNARSDGQPPSNPQRLTDSVVDGHLSVPAFERHLFTLGGEWRKEELED
RSVNTAGDASARHKALFLQDEIAFGPDWSLTLGSRFDKHEAFGWESSPRLYLLHHLSDALTLRAGVGRGYKA
PSLKQLSPEYAAVGGGGRFTIYGNPDLKPETNTSYELGADYQGDGWSLKGTVFENDVRDLIQTVCVARCGVR
GGEIRNYENVDRARIRGLELSGGVDLPADLRWELNYTYLDARNRTAGQRLGDRSRHLANSQLRWSPNARFSA
QLRTEYVGSQVAYSSNVGYALPAYSLWHLELSQKLSENLTLRGGIENLGDQRLADDDTHFTYAEPGRTFHLG
LVASF*
AnnotationID:353GeneID:344
AnnotatorUID: diggins
Modification Date/Time: 2005-06-06 12:12:03
Gene Name:
Confidence Code:3
GeneProduct:putative TonB-dependent receptor
Cell Localization:(6) Outer membrane protein
Synonyms:cirA
Cell Localization Confidence Code:3
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG4771,cd01347,COG4206,pfam00593
Secondary Functional Category(ies):membrane protein
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>dbj|BAB36470.1| (AP002560) colicin I receptor precursor [Escherichia coli O157:H7]
          Length = 659

 Score =  400 bits (1028), Expect = e-110
 Identities = 242/672 (36%), Positives = 387/672 (57%), Gaps = 58/672 (8%)

>gb|AAO68357.1| (AE016836) colicin I receptor precursor [Salmonella enterica subsp.
           enterica serovar Typhi Ty2]
          Length = 663

 Score =  383 bits (984), Expect = e-105
 Identities = 235/653 (35%), Positives = 358/653 (54%), Gaps = 52/653 (7%)








 
Structural Features:
COG4771, FepA, Outer membrane receptor for ferrienterochelin and colicins 
[Inorganic ion transport and metabolism]
CD-Length = 699 residues, 100.0% aligned
Score =  715 bits (1848), Expect = 0.0
Identities = 288/702 (41%), Positives = 389/702 (55%), Gaps = 57/702 (8%)

cd01347, ligand_gated_channel
CD-Length = 672 residues, 100.0% aligned
Score =  298 bits (765), Expect = 1e-81

COG4206, BtuB, Outer membrane cobalamin receptor protein [Coenzyme metabolism]
CD-Length = 608 residues,  99.2% aligned
Score =  251 bits (643), Expect = 1e-67
Identities = 180/655 (27%), Positives = 273/655 (41%), Gaps = 77/655 (11%)

pfam00593, TonB_dep_Rec, TonB dependent receptor.
CD-Length = 712 residues, 100.0% aligned
Score =  243 bits (621), Expect = 4e-65
Identities = 177/724 (24%), Positives = 264/724 (36%), Gaps = 133/724 (18%)






   
Genomic Context:






   
Comment:
other possible gene name: feuA


















    ReferenceID:691




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17833




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37023




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:344_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:344
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
575
                           PA1922_tr
                           translation of PA1922
                           653
                           99.54
                           99.54
                           0
                           3414.0
     

     
     
27772
                           gb|AAG05310.1|AE004618_4
                           (AE004618) probable TonB-dependent receptor [Pseudomonas aeruginosa PAO1]
                           653
                           99.54
                           99.54
                           0
                           3414.0
     

     
     
27773
                           gb|AAG02210.1|AF290511_1
                           (AF290511) CirA [Pseudomonas aeruginosa]
                           653
                           99.54
                           99.54
                           0
                           3414.0
     

     
     
27774
                           gb|AAB67039.1|
                           (AF012818) ferric enterobactin receptor [Pseudomonas stutzeri]
                           661
                           11.04
                           16.79
                           491
                           284.0
     

     
     
27775
                           gb|AAA17054.1|
                           (M89774) cir [Escherichia coli]
                           661
                           7.56
                           12.70
                           544
                           262.0
     

     






      

          
GC ORFID: 43346How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1922Glimmer Score: 

          
Start: 1419070Stop: 1421031

          
Length: 1962


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1922 translation of PA1922Homolog Bit Score 1319.0

          
Other Homologs:  t_PA1922 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACCCCCCATTCCTCCCCGCACCGTCTTCCTCCGCTGCGGCTGGCCCGCGCCGTGCCGTTCCTCTACCTG 
CTTCCCTGCCTGGCGCTGGCCGCGCCGGTCGACCTGGAGCCGACGGTGGTCAGCGCCACCACTACCGAGCGC 
AAGCTGCGCGACGCCCCGGCCAGCGTTTCGCTGATCGCCGCCGAGGACCTGCGGCGGCGCCCGGTGCGCGAC 
CTGCAGGAAGCCCTGCGCGGTTCGGAAAGCCTGCAGTTCAACGGCGTCGGCATGTCCCGGCGGGGCATCAGC 
GTTCGCGGCATGTCCAGCGAGCACACCCTGGTGCTGGTGGACGGCCAGCGGATCTCCACCTCGTCCGGGGCC 
ATCGCCCATTCCGACTTCGACCTCGGCTGGGTGCCGGTGGAGAGCATCGAGCGCATCGAGGTGGTACGCGGA 
CCGATGTCCTCGCTCTACGGTTCGGAAGCCCTCGGCGGAGTGGTGAACGTGATCACCCGGCGCGCCACCGAT 
ACCTGGACGGGCAGCGGCCTGCTCGATGGCGGCGTGCGCGAGGACGGCCTCGGCGGGCAGAGCCACCAGCTC 
GGCGCCTATCTCGCCGGGCCGCTGGTCCCCGGCAAGCTGGGCCTCGCCCTGAACGGCGAGAGCCGCCGCCAG 
CAGGAAACCCCGGACGCCGACGAGCGCCGGCTCTCCGAGCTGGAAGGCGGCAACGCCGACAGCGGCGGGCTG 
AACCTCAGTTGGACCCCGGACGACGCCCAGCGCATCGACCTCGGCCACCAGCGCGGGCGCGAACGACGCTGG 
CGCAACAGCGAGACCGGGGGGCCGCGCTCGCGCTACTACGAGTCGCGCGACGTGATCGAACGCGAGCGCTGG 
TCGCTCGCCCACAATGGCCAGTGGGACTGGGGCAGCAGCCAGCTGCGCACCTACCGCAACCGCCTGGAGCGG 
CACAACGCGCGTTCCGACGGACAACCGCCGAGCAACCCGCAGCGCCTTACCGACAGCGTGGTCGACGGCCAC 
CTCAGCGTGCCGGCCTTCGAGCGACATCTCTTCACCCTCGGCGGCGAATGGCGCAAGGAGGAACTGGAGGAT 
CGCTCGGTGAATACCGCCGGCGACGCCAGCGCGCGACACAAGGCGTTGTTCCTGCAGGACGAGATCGCCTTC 
GGCCCGGACTGGTCGCTGACCCTCGGCAGCCGCTTCGACAAGCACGAGGCGTTCGGCTGGGAAAGCAGTCCG 
CGCCTGTACCTGCTGCACCACCTTTCCGATGCGCTGACCCTGCGCGCCGGCGTCGGCCGCGGCTACAAGGCG 
CCGAGCCTGAAGCAGCTATCGCCGGAGTATGCGGCGGTCGGCGGCGGCGGGCGCTTCACTATCTACGGCAAT 
CCCGACCTGAAGCCGGAGACCAATACGTCCTACGAACTGGGCGCCGACTACCAGGGCGACGGCTGGTCGCTG 
AAGGGCACGGTGTTCGAGAACGATGTCCGCGACCTGATCCAGACCGTCTGCGTAGCGCGCTGCGGGGTGCGC 
GGCGGCGAGATACGCAACTACGAGAACGTCGACAGGGCACGGATCCGCGGCCTCGAGCTGAGCGGCGGCGTG 
GACCTGCCGGCGGACCTGCGCTGGGAACTCAACTACACCTACCTCGACGCGCGCAACCGCACCGCCGGCCAG 
CGCCTCGGCGACCGCTCCcGGCACCTCGCCAACAGCCAATTGCGCTGGAGCCCCAATGCGCGCTTCAGCGCC 
CAGTTGCGTACCGAATACGTCGGCAGCCAGGTGGCCTACAGCAGCAACGTCGGCTACGCCTTGCCGGCCTAC 
AGCCTGTGGCACCTGGAGCTGAGCCAGAAACTCAGCGAGAACCTGACGCTGCGCGGCGGCATCGAGAACCTT 
GGCGACCAGCGCCTGGCCGACGACGACACGCACTTCACCTATGCCGAACCTGGGCGGACCTTCCATCTCGGC 
CTGGTGGCGAGCTTCTGA