ViewGene
Locus Name:
GeneID:
Location:

GeneID:3439
TrivialName: PA14_49910
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_49910
PAO1 Ortholog Locus:PA1118
Sequence Length:684
Protein Length:227
Start: 4437362
Stop: 4438045
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04507.1|AE004542_3 (AE004542) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 222/227 (97%), Positives = 224/227 (98%)
Sequence:
ATGCTGCGCAAGAAACCGACAATCCCGGCCGACCTGCCGTTTGCGGGTGCTCCGGGATTCACCGACAGGGGG
TATCGACCTTTGCCTGTTCGCCCAAGGAACAGGCCGTCAGACGATGGGAGGCATGCCATGAACCGGCATTAC
TACATCAGCGACAACCTCGACGAGCTGGAACGGCTCGAAGCCGAACTGGAAGCCAGCGGCATCGCCACCGAG
CAGATCCACGTCCTCAGCGAAAAGGACGCGGAGACCGGCCAGCGCCATCTGCACGAAGTCTCTCCGTTCATG
AAGAAGGATGTGGTCCGCTCCGGCCGTGTCGGCCTGCTGGTCGGCCTCGCCCTGGCCATCGTCGCCGTGGCC
TTCGCCTATGCCAGCGGCTGGACGGAAACCGCCGCCGGCTGGATTCCGGTGATCTTCCTCGGCGCCGTGCTC
TGCGCGTTCTGCCTGTGGGAAGGCAGCTTCTTCGGCCTGCAGCGCACCAACCGCGCCTTCCGCCCCTTCGAA
GAACGCCTGCACCAGGGGCAGCACCTGTTCTTCGTCGATGTGAAGAACGTCCAGGAGCCGATCCTGGTCAAC
GTGGTCAGCCACCACCCGCGCCTGCAGGACGCCGGCACCGGCCCCGCGGTCTCTCCGCTGCTGCTGGGCTGG
CAGCAACGCTGGCGGCGGTTCCGGCGGATGGTCTGA
Translation:
MLRKKPTIPADLPFAGAPGFTDRGYRPLPVRPRNRPSDDGRHAMNRHYYISDNLDELERLEAELEASGIATE
QIHVLSEKDAETGQRHLHEVSPFMKKDVVRSGRVGLLVGLALAIVAVAFAYASGWTETAAGWIPVIFLGAVL
CAFCLWEGSFFGLQRTNRAFRPFEERLHQGQHLFFVDVKNVQEPILVNVVSHHPRLQDAGTGPAVSPLLLGW
QQRWRRFRRMV*
AnnotationID:3447GeneID:3439
AnnotatorUID: danlee
Modification Date/Time: 2004-06-23 14:02:31
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA1118
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:6881




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24023




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3439
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5495
                           PA1118_tr
                           translation of PA1118
                           227
                           97.79
                           98.67
                           0
                           1182.0
     

     
     
153486
                           gb|AAG04507.1|AE004542_3
                           (AE004542) hypothetical protein PA1118 [Pseudomonas aeruginosa PAO1]
                           227
                           97.79
                           98.67
                           0
                           1182.0
     

     






      

          
GC ORFID: 46441How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1118Glimmer Score: 

          
Start: 516546Stop: 515863

          
Length: 684


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1118 translation of PA1118Homolog Bit Score 459.0

          
Other Homologs:  t_PA1118 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCTGCGCAAGAAACCGACAATCCCGGCCGACCTGCCGTTTGCGGGTGCTCCGGGATTCACCGACAGGGGG 
TATCGACCTTTGCCTGTTCGCCCAAGGAACAGGCCGTCAGACGATGGGAGGCATGCCATGAACCGGCATTAC 
TACATCAGCGACAACCTCGACGAGCTGGAACGGCTCGAAGCCGAACTGGAAGCCAGCGGCATCGCCACCGAG 
CAGATCCACGTCCTCAGCGAAAAGGACGCGGAGACCGGCCAGCGCCATCTGCACGAAGTCTCTCCGTTCATG 
AAGAAGGATGTGGTCCGCTCCGGCCGTGTCGGCCTGCTGGTCGGCCTCGCCCTGGCCATCGTCGCCGTGGCC 
TTCGCCTATGCCAGCGGCTGGACGGAAACCGCCGCCGGCTGGATTCCGGTGATCTTCCTCGGCGCCGTGCTC 
TGCGCGTTCTGCCTGTGGGAAGGCAGCTTCTTCGGCCTGCAGCGCACCAACCGCGCCTTCCGCCCCTTCGAA 
GAACGCCTGCACCAGGGGCAGCACCTGTTCTTCGTCGATGTGAAGAACGTCCAGGAGCCGATCCTGGTCAAC 
GTGGTCAGCCACCACCCGCGCCTGCAGGACGCCGGCACCGGCCCCGCGGTCTCTCCGCTGCTGCTGGGCTGG 
CAGCAACGCTGGCGGCGGTTCCGGCGGATGGTCTGA