ViewGene
Locus Name:
GeneID:
Location:

GeneID:3438
TrivialName: PA14_02500
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_02500
PAO1 Ortholog Locus:PA0198
Sequence Length:720
Protein Length:239
Start: 224960
Stop: 225679
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03587.1|AE004458_2 (AE004458) transport protein ExbB [Pseudomonas aeruginosa PAO1]
Identities = 239/239 (100%), Positives = 239/239 (100%)
Sequence:
ATGAGTCTGTTAACCACCCCGCTCGAATCCGTCGAAGGCGCCGTCATCTGGCTGCTGGTCGGCTTTTCCGTG
GTCACCTGGGGCCTGGCCCTGGTCAAGGGCGTGCAGTTCGCCCGGCAGAAGCGCCAGGACCGCCAGTTCCAG
AAGCAGTTCTGGAGCGCCACCAGCCTCGACTCCGCTGGCGAGCAGGCGCAGGACAAGCAGGGCGCCGGCGCC
CGCGTGGCCCAGGCCGGCTTCGCCGCGATCCAGGTGCAGGACAACGGCCAGCCCGACCTGGCCCAGTCGATC
AACCACCAGGACCGTCTCGAACGCGCCCTGCGCCAGCAGATCCAGCGCGAGCGGCGTTCTCTGGAGTCGGGC
CTGGCGGTGCTCGCCTCGATCGGCTCGACCTCGCCCTTCATCGGTCTGTTCGGCACCGTCTGGGGCATCATG
GAGGCGCTCAAGGGGATCAGCGCGGCCGGCTCGGCGAGCCTGGAGACCGTGGCCGGGCCGATCGGCAGCGCG
CTGATCGCCACCGGCGTGGGAATCGCCGTCGCGGTGCCGGCGGTGCTGGTCTACAACTACTTCCTGCGGCGC
CTGAAGCTGACCGCCGCCGACCTCGACGACTTCGCCCACGACTTCTACAGCCTGGCGCAGAAGAGCGCGTTC
CGCGTCATCGTCCATCCCTCCGCCGCGCGCCAGGCCGGCAACCCCTCGCGCAACGTGAAGGAGGCGTCCTGA
Translation:
MSLLTTPLESVEGAVIWLLVGFSVVTWGLALVKGVQFARQKRQDRQFQKQFWSATSLDSAGEQAQDKQGAGA
RVAQAGFAAIQVQDNGQPDLAQSINHQDRLERALRQQIQRERRSLESGLAVLASIGSTSPFIGLFGTVWGIM
EALKGISAAGSASLETVAGPIGSALIATGVGIAVAVPAVLVYNYFLRRLKLTAADLDDFAHDFYSLAQKSAF
RVIVHPSAARQAGNPSRNVKEAS*
AnnotationID:3446GeneID:3438
AnnotatorUID: danlee
Modification Date/Time: 2006-01-31 16:04:55
Gene Name:exbB1
Confidence Code:2
GeneProduct: transport protein ExbB
Cell Localization:()
Synonyms:exbB
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0811
Secondary Functional Category(ies):intracellular trafficking and secretion
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO55989.1| (AE016864) TonB system transport protein ExbB [Pseudomonas syringae
           pv. tomato str. DC3000]
          Length = 242

 Score =  363 bits (933), Expect = e-100
 Identities = 191/242 (78%), Positives = 213/242 (88%), Gaps = 3/242 (1%)








 
Structural Features:
COG0811, TolQ, Biopolymer transport proteins [Intracellular trafficking and secretion]
CD-Length = 216 residues, 100.0% aligned
Score =  165 bits (419), Expect = 5e-42
Identities = 81/216 (37%), Positives = 117/216 (54%), Gaps = 1/216 (0%)






   
Genomic Context:






   
Comment:


















    ReferenceID:6879




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24021




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33569




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3438_cdd.html


    		




 
URL:

















    ReferenceID:35474




  
Author/Investigator(s):
        Zhao Q, Poole K.





  
Title:
        A second tonB gene in Pseudomonas aeruginosa is linked to the exbB and exbD genes.




  
PubMed:
        10689178


MedLine:
        




    
Source:
FEMS Microbiol Lett. 2000 Mar 1;184(1):127-32.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=10689178

















    ReferenceID:35475




  
Author/Investigator(s):
        Eick-Helmerich K, Braun V.





  
Title:
        Import of biopolymers into Escherichia coli: nucleotide sequences of the exbB and exbD genes are homologous to those of the tolQ and tolR genes, respectively.




  
PubMed:
        2670903


MedLine:
        




    
Source:
J Bacteriol. 1989 Sep;171(9):5117-26.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=2670903









           
Homologs By Global Alignment 

           

       



     
Gene ID:3438
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5494
                           PA0198_tr
                           translation of PA0198
                           239
                           99.99
                           99.99
                           0
                           1183.0
     

     
     
153474
                           gb|AAG03587.1|AE004458_2
                           (AE004458) transport protein ExbB [Pseudomonas aeruginosa PAO1]
                           239
                           99.99
                           99.99
                           0
                           1183.0
     

     
     
153475
                           gb|AAF04083.1|AF190125_2
                           (AF190125) ExbB [Pseudomonas aeruginosa]
                           239
                           99.99
                           99.99
                           0
                           1183.0
     

     
     
153476
                           gb|AAO55989.1|
                           (AE016864) TonB system transport protein ExbB [Pseudomonas syringae pv. tomato str. DC3000]
                           242
                           78.92
                           88.01
                           3
                           937.0
     

     
     
153477
                           gb|AAO53816.1|
                           (AE016856) biopolymer transport protein ExbB, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           245
                           58.36
                           71.83
                           16
                           689.0
     

     






      

          
GC ORFID: 46440How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0198Glimmer Score: 

          
Start: 6026301Stop: 6027020

          
Length: 720


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0198 translation of PA0198Homolog Bit Score 460.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene1254 (ORF: BLASTX 357.0), psyr_15may02_Scaffold2_revised_gene3076 (ORF: BLASTX 268.0), psyr_15may02_Scaffold4_revised_gene5864 (ORF: BLASTX 211.0), t_PA0198 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGTCTGTTAACCACCCCGCTCGAATCCGTCGAAGGCGCCGTCATCTGGCTGCTGGTCGGCTTTTCCGTG 
GTCACCTGGGGCCTGGCCCTGGTCAAGGGCGTGCAGTTCGCCCGGCAGAAGCGCCAGGACCGCCAGTTCCAG 
AAGCAGTTCTGGAGCGCCACCAGCCTCGACTCCGCTGGCGAGCAGGCGCAGGACAAGCAGGGCGCCGGCGCC 
CGCGTGGCCCAGGCCGGCTTCGCCGCGATCCAGGTGCAGGACAACGGCCAGCCCGACCTGGCCCAGTCGATC 
AACCACCAGGACCGTCTCGAACGCGCCCTGCGCCAGCAGATCCAGCGCGAGCGGCGTTCTCTGGAGTCGGGC 
CTGGCGGTGCTCGCCTCGATCGGCTCGACCTCGCCCTTCATCGGTCTGTTCGGCACCGTCTGGGGCATCATG 
GAGGCGCTCAAGGGGATCAGCGCGGCCGGCTCGGCGAGCCTGGAGACCGTGGCCGGGCCGATCGGCAGCGCG 
CTGATCGCCACCGGCGTGGGAATCGCCGTCGCGGTGCCGGCGGTGCTGGTCTACAACTACTTCCTGCGGCGC 
CTGAAGCTGACCGCCGCCGACCTCGACGACTTCGCCCACGACTTCTACAGCCTGGCGCAGAAGAGCGCGTTC 
CGCGTCATCGTCCATCCCTCCGCCGCGCGCCAGGCCGGCAACCCCTCGCGCAACGTGAAGGAGGCGTCCTGA