ViewGene
Locus Name:
GeneID:
Location:

GeneID:3437
TrivialName: PA14_64860
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_64860
PAO1 Ortholog Locus:PA4909
Sequence Length:717
Protein Length:238
Start: 5780053
Stop: 5779337
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08294.1|AE004904_2 (AE004904) probable ATP-binding component of ABC transporter [Pseudomonas aeruginosa PAO1]
Identities = 238/238 (100%), Positives = 238/238 (100%)
Sequence:
ATGAGCGCGGCGTTGCTGGAATTCCGTGAGGTGGACGTGTTCTACGGGCCGATCCAGGCGCTGAAGAAGGTC
TCGCTGCAGGTCAACGAGGGCGAGACGGTGAGCCTGATCGGTGCCAACGGCGCGGGCAAGTCGACGCTGTTG
ATGTCGATCTTCGGCCAGCCGCGCGCGGCGGCCGGGCAGATCCTCTATCGCGGCCAGGACATCCGCCAGAAG
TCGGCGCACTACGTGGCGTCCAACGGCATCGCGCAGTCGCCGGAAGGACGCCGGGTGTTCCCCGACATGAGC
GTCGAGGAAAACCTGCTGATGGGTACCATTCCCATCGGCATGGACCACGCCGAGGAGGACATGCAGCGCATG
TTCGAGCTGTTCCCGCGCCTGAAGGAGCGGCGCAACCAGCGCGCCATGACCATGTCCGGCGGCGAGCAGCAG
ATGCTCGCCATCGCCCGCGCGCTGATGAGCCGGCCGAAGCTGCTGTTGCTCGACGAGCCCTCCCTGGGCCTG
GCGCCGATCGTGGTCAAGCAGATCTTCCAGACCCTGCGCGAGCTGGCCAGGAGCGGCATGACCATCTTCCTC
GTCGAGCAGAACGCCAACCATGCGCTGAAGCTCTCCGATCGCGCCTACGTGATGGTCACCGGGGAAATCCGC
ATGAGCGGCAGCGGCGAAGAACTGCTCGGCAACCAGGAGGTGCGCAACGCCTATCTCGGCGGACATTGA
Translation:
MSAALLEFREVDVFYGPIQALKKVSLQVNEGETVSLIGANGAGKSTLLMSIFGQPRAAAGQILYRGQDIRQK
SAHYVASNGIAQSPEGRRVFPDMSVEENLLMGTIPIGMDHAEEDMQRMFELFPRLKERRNQRAMTMSGGEQQ
MLAIARALMSRPKLLLLDEPSLGLAPIVVKQIFQTLRELARSGMTIFLVEQNANHALKLSDRAYVMVTGEIR
MSGSGEELLGNQEVRNAYLGGH*
AnnotationID:3445GeneID:3437
AnnotatorUID: diggins
Modification Date/Time: 2005-03-11 15:03:08
Gene Name:
Confidence Code:3
GeneProduct:putative ranched-chain amino acid ABC transporter, ATP-binding protein
Cell Localization:()
Synonyms:livF
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0410,COG0411,cd00267
Secondary Functional Category(ies):amino acid transport and metabolism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN70432.1|AE016684_11 (AE016792) branched-chain amino acid ABC transporter, ATP-binding
           protein [Pseudomonas putida KT2440]
          Length = 238

 Score =  411 bits (1056), Expect = e-114
 Identities = 205/238 (86%), Positives = 227/238 (95%)

>gb|AAO58343.1| (AE016873) high affinity branched-chain amino acid ABC transporter,
           ATP-binding protein [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 238

 Score =  409 bits (1052), Expect = e-114
 Identities = 206/238 (86%), Positives = 224/238 (94%)

>gb|AAL51443.1| (AE009468) HIGH-AFFINITY BRANCHED-CHAIN AMINO ACID TRANSPORT
           ATP-BINDING PROTEIN BRAG [Brucella melitensis 16M]
          Length = 249

 Score =  284 bits (727), Expect = 3e-76
 Identities = 150/234 (64%), Positives = 181/234 (77%), Gaps = 1/234 (0%)






 
Structural Features:
COG0410, LivF, ABC-type branched-chain amino acid transport systems, 
ATPase component 
[Amino acid transport and metabolism]
CD-Length = 237 residues, 100.0% aligned
Score =  325 bits (836), Expect = 2e-90
Identities = 136/237 (57%), Positives = 173/237 (72%), Gaps = 2/237 (0%)

cd00267, ABC_ATPase, ABC (ATP-binding cassette) transporter nucleotide-binding domain
CD-Length = 217 residues,  99.5% aligned
Score =  157 bits (399), Expect = 1e-39
Identities = 73/218 (33%), Positives = 114/218 (52%), Gaps = 5/218 (2%)

pfam00005, ABC_tran, ABC transporter.
CD-Length = 183 residues,  98.4% aligned
Score =  150 bits (379), Expect = 2e-37
Identities = 67/182 (36%), Positives = 103/182 (56%), Gaps = 4/182 (2%)






   
Genomic Context:






   
Comment:


















    ReferenceID:6877




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24019




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:35151




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3437_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3437
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5491
                           PA4909_tr
                           translation of PA4909
                           238
                           99.99
                           99.99
                           0
                           1183.0
     

     
     
153298
                           gb|AAG08294.1|AE004904_2
                           (AE004904) probable ATP-binding component of ABC transporter [Pseudomonas aeruginosa PAO1]
                           238
                           99.99
                           99.99
                           0
                           1183.0
     

     
     
153300
                           gb|AAO58343.1|
                           (AE016873) high affinity branched-chain amino acid ABC transporter, ATP-binding protein [Pseudomonas syringae pv. tomato str. DC3000]
                           238
                           86.55
                           94.11
                           0
                           1052.0
     

     
     
153299
                           gb|AAN70432.1|AE016684_11
                           (AE016792) branched-chain amino acid ABC transporter, ATP-binding protein [Pseudomonas putida KT2440]
                           238
                           86.13
                           95.37
                           0
                           1056.0
     

     
     
153302
                           dbj|BAB50743.1|
                           (AP003003) ATP-binding component of ABC transporter [Mesorhizobium loti]
                           242
                           61.15
                           74.38
                           4
                           718.0
     

     






      

          
GC ORFID: 46439How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4909Glimmer Score: 

          
Start: 5043734Stop: 5043018

          
Length: 717


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4909 translation of PA4909Homolog Bit Score 460.0

          
Other Homologs:  psyr_15may02_Scaffold5_revised_gene6077 (ORF: BLASTX 269.0), t_PA1070 (ORF: BLASTX 265.0), psyr_15may02_Scaffold2_revised_gene3454 (ORF: BLASTX 193.0), t_PA4862 (ORF: BLASTX 163.0), psyr_15may02_Scaffold4_revised_gene5801 (ORF: BLASTX 160.0), t_PA4909 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCGCGGCGTTGCTGGAATTCCGTGAGGTGGACGTGTTCTACGGGCCGATCCAGGCGCTGAAGAAGGTC 
TCGCTGCAGGTCAACGAGGGCGAGACGGTGAGCCTGATCGGTGCCAACGGCGCGGGCAAGTCGACGCTGTTG 
ATGTCGATCTTCGGCCAGCCGCGCGCGGCGGCCGGGCAGATCCTCTATCGCGGCCAGGACATCCGCCAGAAG 
TCGGCGCACTACGTGGCGTCCAACGGCATCGCGCAGTCGCCGGAAGGACGCCGGGTGTTCCCCGACATGAGC 
GTCGAGGAAAACCTGCTGATGGGTACCATTCCCATCGGCATGGACCACGCCGAGGAGGACATGCAGCGCATG 
TTCGAGCTGTTCCCGCGCCTGAAGGAGCGGCGCAACCAGCGCGCCATGACCATGTCCGGCGGCGAGCAGCAG 
ATGCTCGCCATCGCCCGCGCGCTGATGAGCCGGCCGAAGCTGCTGTTGCTCGACGAGCCCTCCCTGGGCCTG 
GCGCCGATCGTGGTCAAGCAGATCTTCCAGACCCTGCGCGAGCTGGCCAGGAGCGGCATGACCATCTTCCTC 
GTCGAGCAGAACGCCAACCATGCGCTGAAGCTCTCCGATCGCGCCTACGTGATGGTCACCGGGGAAATCCGC 
ATGAGCGGCAGCGGCGAAGAACTGCTCGGCAACCAGGAGGTGCGCAACGCCTATCTCGGCGGACATTGA