ViewGene
Locus Name:
GeneID:
Location:

GeneID:3436
TrivialName: PA14_16750
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_16750
PAO1 Ortholog Locus:PA3681
Sequence Length:696
Protein Length:231
Start: 1434062
Stop: 1434757
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07069.1|AE004787_9 (AE004787) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 223/231 (96%), Positives = 226/231 (97%)
Sequence:
GTGCGCCGCCTGGCCTGGTTGCTGCCATTGCTGCTGCTGGCGGGGGCCGTCGGCGCCCTGCGCTACCAGTGG
CTCGATCTGCCGGCGCGCTGGAATCCCTGGCTGCCGCTGGACGTGCGCGAACCGCCGAACCTGCTGACCCGC
TACAAGCTATGGCGGCTGGCCGACGACCGGAGCCTCTGTGACGCCGCCCTGGCCACCTCGCAACTGCGCTAC
CAGCGGGTCGCCGACGATCCGCCATCGGCTACCTGCCCGTTGAGCAACAGCCTGCGCGTGCGTGGGGCGGCA
TTGGAGTTGAGCAGCAGCTTCCTCGCCAGTTGCCCGTTGGCAGTGAGCTATGCATTGTTCGAGCGCCACGTG
CTGCAACTGGCAGCCCTGGATATCTATGGCCAGCCGCTGACGCGGGTCGAGCATATCGGCAGCTTCGCCTGC
CGCAACGTCTACAACCGCGAGAACGGCCGGCGCAGCCAGCATGCTTCGGCCAATGCCCTGGACATCAGCGGC
TTCCGCCTGGCCGGCGGGAGGCGAATCCGCCTGGCCACGGACTGGGCCGACCAGGGCGCCGACGGGCGCTTC
CTGCGCCGCGTGCGGGACGGCGCCTGCGCCAGTTTCAATGCGGTGCTGGGGCCCGACTACAATGCCGCCCAC
CGGGATCACTTCCACCTCGACATGGGCCTATGGAAGGTCTGCCGGTGA
Translation:
MRRLAWLLPLLLLAGAVGALRYQWLDLPARWNPWLPLDVREPPNLLTRYKLWRLADDRSLCDAALATSQLRY
QRVADDPPSATCPLSNSLRVRGAALELSSSFLASCPLAVSYALFERHVLQLAALDIYGQPLTRVEHIGSFAC
RNVYNRENGRRSQHASANALDISGFRLAGGRRIRLATDWADQGADGRFLRRVRDGACASFNAVLGPDYNAAH
RDHFHLDMGLWKVCR*
AnnotationID:3444GeneID:3436
AnnotatorUID: diggins
Modification Date/Time: 2005-04-21 11:11:16
Gene Name:
Confidence Code:3
GeneProduct:putative inner membrane protein
Cell Localization:()
Synonyms:PA3681
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAL19335.1| (AE008713) putative inner membrane protein [Salmonella typhimurium
           LT2]
          Length = 237

 Score =  179 bits (455), Expect = 9e-45
 Identities = 101/225 (44%), Positives = 142/225 (63%), Gaps = 8/225 (3%)








 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:14843




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24017




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31864




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3436_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3436
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5490
                           PA3681_tr
                           translation of PA3681
                           231
                           96.53
                           97.83
                           0
                           1183.0
     

     
     
153292
                           gb|AAG07069.1|AE004787_9
                           (AE004787) hypothetical protein PA3681 [Pseudomonas aeruginosa PAO1]
                           231
                           96.10
                           97.83
                           0
                           1180.0
     

     
     
153293
                           gb|AAO55033.1|
                           (AE016861) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           231
                           64.06
                           76.19
                           2
                           786.0
     

     
     
153294
                           gb|AAN67132.1|AE016342_4
                           (AE016779) conserved hypothetical protein [Pseudomonas putida KT2440]
                           232
                           62.93
                           74.13
                           4
                           745.0
     

     
     
153295
                           gb|AAL19335.1|
                           (AE008713) putative inner membrane protein [Salmonella typhimurium LT2]
                           244
                           42.62
                           59.83
                           20
                           466.0
     

     






      

          
GC ORFID: 46438How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3681Glimmer Score: 

          
Start: 3519875Stop: 3519180

          
Length: 696


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3681 translation of PA3681Homolog Bit Score 460.0

          
Other Homologs:  psyr_15may02_Scaffold3_revised_gene4606 (ORF: BLASTX 298.0), t_PA3681 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGCGCCGCCTGGCCTGGTTGCTGCCATTGCTGCTGCTGGCGGGGGCCGTCGGCGCCCTGCGCTACCAGTGG 
CTCGATCTGCCGGCGCGCTGGAATCCCTGGCTGCCGCTGGACGTGCGCGAACCGCCGAACCTGCTGACCCGC 
TACAAGCTATGGCGGCTGGCCGACGACCGGAGCCTCTGTGACGCCGCCCTGGCCACCTCGCAACTGCGCTAC 
CAGCGGGTCGCCGACGATCCGCCATCGGCTACCTGCCCGTTGAGCAACAGCCTGCGCGTGCGTGGGGCGGCA 
TTGGAGTTGAGCAGCAGCTTCCTCGCCAGTTGCCCGTTGGCAGTGAGCTATGCATTGTTCGAGCGCCACGTG 
CTGCAACTGGCAGCCCTGGATATCTATGGCCAGCCGCTGACGCGGGTCGAGCATATCGGCAGCTTCGCCTGC 
CGCAACGTCTACAACCGCGAGAACGGCCGGCGCAGCCAGCATGCTTCGGCCAATGCCCTGGACATCAGCGGC 
TTCCGCCTGGCCGGCGGGAGGCGAATCCGCCTGGCCACGGACTGGGCCGACCAGGGCGCCGACGGGCGCTTC 
CTGCGCCGCGTGCGGGACGGCGCCTGCGCCAGTTTCAATGCGGTGCTGGGGCCCGACTACAATGCCGCCCAC 
CGGGATCACTTCCACCTCGACATGGGCCTATGGAAGGTCTGCCGGTGA