ViewGene
Locus Name:
GeneID:
Location:

GeneID:3435
TrivialName: PA14_02610
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_02610
PAO1 Ortholog Locus:PA0213
Sequence Length:693
Protein Length:230
Start: 231904
Stop: 232596
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03602.1|AE004459_6 (AE004459) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 226/230 (98%), Positives = 227/230 (98%)
Sequence:
GTGGTCATCGCGAACAGCTCACAGCGGGGCTCCAGCCGGCGACGGCTCGCTCCTGATCCGATGCGCCGCAGG
GCAGGGCCGGAACCCCATGACCTGCTCCTGGGCATGGCGCCGGCGCATTTGCCGGAGAATGCTCCGGCCTGG
GTCTGCGCGGCACTGAAGGCCGGCTGGCCGGTGGTGGTGCGCCGTGCGCCGGCAGATCCTGCGCGGGTGGCC
ATCGGCGTGCGCGGCCTGGTGCGGGAGCAGCGCTGGGCCGGCTGGATGCCGTTGGCGGCAATCACCTGGCGC
TTGCGCCCGGAAGCGCTGGGCCAGCGCGAGCCGGCGATGCTGCGCGATCTGCCGGCCTGGCGTGCCTTGCGC
GACCTGCGTGCGCCGCTGAACGCGCTGGGACTGGCCTGGGGCGTGACCGGCGGCGCCGGTTTCGAGCTGGCC
AGCGGGGTCGCCGTGCTGCATCCGGACAGCGACCTCGACCTGCTGCTGCGCACCCCGCGCCCGTTCCCGCGC
GATGACGCGCTGCGCCTGCTGCAACGCTTCGAGCAGTGTCCCTGCCGGATCGACCTGCAATTGCAGACCCCG
GCGGGTGGCGTGGCCCTGCGCGAATGGGCCGAGGGTCGGCCCCGGGTGCTGGCGAAAGGCAGCGAGGCGCCG
CTGTTGCTGGAAGACCCCTGGCGGGTCGCGGAGGTCGAGGCATGA
Translation:
MVIANSSQRGSSRRRLAPDPMRRRAGPEPHDLLLGMAPAHLPENAPAWVCAALKAGWPVVVRRAPADPARVA
IGVRGLVREQRWAGWMPLAAITWRLRPEALGQREPAMLRDLPAWRALRDLRAPLNALGLAWGVTGGAGFELA
SGVAVLHPDSDLDLLLRTPRPFPRDDALRLLQRFEQCPCRIDLQLQTPAGGVALREWAEGRPRVLAKGSEAP
LLLEDPWRVAEVEA*
AnnotationID:3443GeneID:3435
AnnotatorUID: diggins
Modification Date/Time: 2005-03-23 12:12:50
Gene Name:
Confidence Code:3
GeneProduct:putative malonate decarboxylase
Cell Localization:()
Synonyms:mdcG
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(5) Carbon compound catabolism
Alternate Gene Product Name:phosphoribosyl-dephospho-CoA transferase
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:2.7.7.-
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO58509.1| (AE016874) malonate decarboxylase subunit, putative [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 211

 Score =  186 bits (472), Expect = 9e-47
 Identities = 101/200 (50%), Positives = 125/200 (62%)






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:14841




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24015




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:35463




  
Author/Investigator(s):
        Chohnan S, Kurusu Y, Nishihara H, Takamura Y.





  
Title:
        Cloning and characterization of mdc genes encoding malonate decarboxylase from Pseudomonas putida.




  
PubMed:
        10339824


MedLine:
        




    
Source:
FEMS Microbiol Lett. 1999 May 15;174(2):311-9.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=10339824









           
Homologs By Global Alignment 

           

       



     
Gene ID:3435
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5489
                           PA0213_tr
                           translation of PA0213
                           230
                           98.26
                           98.69
                           0
                           1187.0
     

     
     
153287
                           gb|AAG03602.1|AE004459_6
                           (AE004459) hypothetical protein PA0213 [Pseudomonas aeruginosa PAO1]
                           230
                           97.82
                           98.69
                           0
                           1184.0
     

     
     
153289
                           dbj|BAA36209.1|
                           (AB017138) holo-acyl carrier protein [Pseudomonas putida]
                           233
                           44.20
                           52.36
                           32
                           460.0
     

     
     
153288
                           gb|AAO58509.1|
                           (AE016874) malonate decarboxylase subunit, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           236
                           44.06
                           54.66
                           31
                           460.0
     

     
     
153290
                           gb|AAC45459.1|
                           (U95087) MdcG [Klebsiella pneumoniae]
                           241
                           37.75
                           45.64
                           47
                           350.0
     

     






      

          
GC ORFID: 46437How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0213Glimmer Score: 

          
Start: 6033245Stop: 6033937

          
Length: 693


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0213 translation of PA0213Homolog Bit Score 461.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3322 (ORF: BLASTX 183.0), t_PA0213 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGGTCATCGCGAACAGCTCACAGCGGGGCTCCAGCCGGCGACGGCTCGCTCCTGATCCGATGCGCCGCAGG 
GCAGGGCCGGAACCCCATGACCTGCTCCTGGGCATGGCGCCGGCGCATTTGCCGGAGAATGCTCCGGCCTGG 
GTCTGCGCGGCACTGAAGGCCGGCTGGCCGGTGGTGGTGCGCCGTGCGCCGGCAGATCCTGCGCGGGTGGCC 
ATCGGCGTGCGCGGCCTGGTGCGGGAGCAGCGCTGGGCCGGCTGGATGCCGTTGGCGGCAATCACCTGGCGC 
TTGCGCCCGGAAGCGCTGGGCCAGCGCGAGCCGGCGATGCTGCGCGATCTGCCGGCCTGGCGTGCCTTGCGC 
GACCTGCGTGCGCCGCTGAACGCGCTGGGACTGGCCTGGGGCGTGACCGGCGGCGCCGGTTTCGAGCTGGCC 
AGCGGGGTCGCCGTGCTGCATCCGGACAGCGACCTCGACCTGCTGCTGCGCACCCCGCGCCCGTTCCCGCGC 
GATGACGCGCTGCGCCTGCTGCAACGCTTCGAGCAGTGTCCCTGCCGGATCGACCTGCAATTGCAGACCCCG 
GCGGGTGGCGTGGCCCTGCGCGAATGGGCCGAGGGTCGGCCCCGGGTGCTGGCGAAAGGCAGCGAGGCGCCG 
CTGTTGCTGGAAGACCCCTGGCGGGTCGCGGAGGTCGAGGCATGA