ViewGene
Locus Name:
GeneID:
Location:

GeneID:3434
TrivialName: PA14_02110
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_02110
PAO1 Ortholog Locus:PA0169
Sequence Length:708
Protein Length:235
Start: 192532
Stop: 191825
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03559.1|AE004454_11 (AE004454) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 235/235 (100%), Positives = 235/235 (100%)
Sequence:
GTGCGGCTGGAGCGCATCGCCCGGATCTCCGACGGTTTCCAGTCGATGGCGCGGGAGCAGAACCTGTCGCTG
TCCGAGCGCTACCACAAGCAACTGCGGCGCCTGGAAAAGGTGGCGCGGATCTCCGACCGCTACCAGCAGATG
ATGCGCGACCTCAACCTGGCGCTGAAGGAAGCCTCGATCCGCGACCCGCTGACCGGCCTGCCCAACCGACGC
ATGCTGCTGGAGCGCCTCAGGGAGGAGAACGAACGCTCCCAGCGCCACGGCCAGAGCTACGTGCTGGCGATG
CTCGACGTGGACTTCTTCAAGCAAGTCAACGATACCTGGGGCCACGACAGCGGCGACCGGGTGCTGGTGGAA
ATCGCCCGGGCCATGGAGTCCGAGCTGCGCGAATACGACCTCTGCGGCCGCTGGGGCGGCGAGGAATTCCTC
CTGCTGCTGCCGCAGACCCGCCTGCAGGACGCCGGCCCGGTACTCGAGCGGGTGCGCGACAGCGTACGGACC
CTGGCGGTACGCGTCGGCACCGAGGCGCTGAGCGTCACCGCCAGCGTCGGCGTCACCGAACACCGCATCGGC
GAAACCTATTCGCAGACCGTCAATCGCGCCGACGCCGCACTGCTCGACGCCAAGCGCAGCGGCCGCGACAAA
TGCGTGTTCGCCGCGCTCCCGCCGCTTCCTGCCCCTTCCCGCCCGGCTCCAGCGCGCTGA
Translation:
MRLERIARISDGFQSMAREQNLSLSERYHKQLRRLEKVARISDRYQQMMRDLNLALKEASIRDPLTGLPNRR
MLLERLREENERSQRHGQSYVLAMLDVDFFKQVNDTWGHDSGDRVLVEIARAMESELREYDLCGRWGGEEFL
LLLPQTRLQDAGPVLERVRDSVRTLAVRVGTEALSVTASVGVTEHRIGETYSQTVNRADAALLDAKRSGRDK
CVFAALPPLPAPSRPAPAR*
AnnotationID:3442GeneID:3434
AnnotatorUID: diggins
Modification Date/Time: 2005-03-23 07:07:40
Gene Name:
Confidence Code:3
GeneProduct:putative GGDEF domain
Cell Localization:()
Synonyms:PA0169
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(28) Two-component regulatory systems
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam00990,smart00267,COG2199
Secondary Functional Category(ies):signal transduction mechanism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
pfam00990, GGDEF, GGDEF domain.
CD-Length = 165 residues, 100.0% aligned
Score =  158 bits (401), Expect = 5e-40
Identities = 69/165 (41%), Positives = 95/165 (57%), Gaps = 4/165 (2%)

smart00267, DUF1, Domain of Unknown Function with GGDEF motif
CD-Length = 172 residues, 100.0% aligned
Score =  154 bits (391), Expect = 8e-39
Identities = 71/173 (41%), Positives = 107/173 (61%), Gaps = 2/173 (1%)

COG2199, COG2199, FOG: GGDEF domain [Signal transduction mechanisms]
CD-Length = 181 residues,  98.3% aligned
Score =  152 bits (385), Expect = 4e-38
Identities = 78/179 (43%), Positives = 107/179 (59%), Gaps = 3/179 (1%)






   
Genomic Context:






   
Comment:


















    ReferenceID:14839




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24013




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33539




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3434_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3434
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5486
                           PA0169_tr
                           translation of PA0169
                           235
                           99.99
                           99.99
                           0
                           1186.0
     

     
     
153241
                           gb|AAG03559.1|AE004454_11
                           (AE004454) hypothetical protein PA0169 [Pseudomonas aeruginosa PAO1]
                           235
                           99.57
                           99.99
                           0
                           1183.0
     

     
     
153243
                           gb|AAK82996.1|AF285783_1
                           (AF285783) unknown [Myxococcus xanthus]
                           238
                           35.71
                           47.05
                           65
                           364.0
     

     
     
153246
                           gb|AAR36766.1|
                           (AE017219) GGDEF/response regulator receiver domain protein [Geobacter sulfurreducens PCA]
                           326
                           27.91
                           42.02
                           109
                           332.0
     

     
     
153259
                           gb|AAO55259.1|
                           (AE016862) GGDEF domain protein [Pseudomonas syringae pv. tomato str. DC3000]
                           326
                           26.99
                           39.26
                           109
                           293.0
     

     






      

          
GC ORFID: 46436How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0169Glimmer Score: 

          
Start: 5993871Stop: 5993164

          
Length: 708


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0169 translation of PA0169Homolog Bit Score 461.0

          
Other Homologs:  t_PA0169 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGCGGCTGGAGCGCATCGCCCGGATCTCCGACGGTTTCCAGTCGATGGCGCGGGAGCAGAACCTGTCGCTG 
TCCGAGCGCTACCACAAGCAACTGCGGCGCCTGGAAAAGGTGGCGCGGATCTCCGACCGCTACCAGCAGATG 
ATGCGCGACCTCAACCTGGCGCTGAAGGAAGCCTCGATCCGCGACCCGCTGACCGGCCTGCCCAACCGACGC 
ATGCTGCTGGAGCGCCTCAGGGAGGAGAACGAACGCTCCCAGCGCCACGGCCAGAGCTACGTGCTGGCGATG 
CTCGACGTGGACTTCTTCAAGCAAGTCAACGATACCTGGGGCCACGACAGCGGCGACCGGGTGCTGGTGGAA 
ATCGCCCGGGCCATGGAGTCCGAGCTGCGCGAATACGACCTCTGCGGCCGCTGGGGCGGCGAGGAATTCCTC 
CTGCTGCTGCCGCAGACCCGCCTGCAGGACGCCGGCCCGGTACTCGAGCGGGTGCGCGACAGCGTACGGACC 
CTGGCGGTACGCGTCGGCACCGAGGCGCTGAGCGTCACCGCCAGCGTCGGCGTCACCGAACACCGCATCGGC 
GAAACCTATTCGCAGACCGTCAATCGCGCCGACGCCGCACTGCTCGACGCCAAGCGCAGCGGCCGCGACAAA 
TGCGTGTTCGCCGCGCTCCCGCCGCTTCCTGCCCCTTCCCGCCCGGCTCCAGCGCGCTGA