ViewGene
Locus Name:
GeneID:
Location:

GeneID:3433
TrivialName: PA14_01480
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_01480
PAO1 Ortholog Locus:PA0121
Sequence Length:735
Protein Length:244
Start: 138917
Stop: 139651
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03511.1|AE004450_6 (AE004450) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 242/244 (99%), Positives = 243/244 (99%)
Sequence:
ATGGTCGGATTCGACGCACGTACCCAGCAGGGCGCCGCGCTGCGCCCCACCAGCCATTTCGTCTACGAAAGC
ATCTACACGGCGATCCTGGAAAAGCGCCTGGCGCCGGCCGCCAAGCTGAGCAAGGAAACCCTCGGGCAGATC
TTCCGGGTCAGCAACGGCACCATCCAGCGTGCCCTCACCCGTCTCGCCGAGGACGGCGCGGTGGTGATGCCG
CCGAAGGAGGTCGCCAGCGTCGCCCGCCCGGACGAGCGCCAGGCGCGGCAGGTGCTGGACGCGCGCCTGCTG
GTGGAAAGCGAAGTGGTGCGGCAACTGCCCGCGGGGCTGGATCCCGCCGCCCTTGCCGAGCTGCGGGCGCTG
GTCGACGAGGAGCAGGCTTGCCTCGCGGCCCGCGACAGCGCCGGGCTGATCCGTCTCGCCGGGCGCTTCCAC
CTGCGCCTGGCCGAACTGACCGAGAATCCCTTGCTGCAGGGTTTCGTCCGCGGCCTGGTGGCACGCGCCTCG
CTGGACATCGCGCTGAACAAGGGGGCGGTCTATACCGCCGAGGCCTGCGCCGCGCAGCGCGCCTTGCTCGAT
GCCCTGGAGGACGGCGACAGCGCGGCGGCGGCTGCGCTGATGGACGCTTACCTGCGAGGCCTGTTCGCCCGC
ATGCGCTTCCTGCCGCCACCTACCACCGACCTGCGCGAGGCATTCGGCATGAAGGCCCCTCGTGGGGAAAAA
CGCCGGAGGGCCTGA
Translation:
MVGFDARTQQGAALRPTSHFVYESIYTAILEKRLAPAAKLSKETLGQIFRVSNGTIQRALTRLAEDGAVVMP
PKEVASVARPDERQARQVLDARLLVESEVVRQLPAGLDPAALAELRALVDEEQACLAARDSAGLIRLAGRFH
LRLAELTENPLLQGFVRGLVARASLDIALNKGAVYTAEACAAQRALLDALEDGDSAAAAALMDAYLRGLFAR
MRFLPPPTTDLREAFGMKAPRGEKRRRA*
AnnotationID:3441GeneID:3433
AnnotatorUID: diggins
Modification Date/Time: 2005-03-22 19:07:28
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator
Cell Localization:()
Synonyms:PA0121
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1802
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG1802, GntR, Transcriptional regulators [Transcription]
CD-Length = 230 residues, 100.0% aligned
Score =  107 bits (267), Expect = 2e-24
Identities = 72/231 (31%), Positives = 101/231 (43%), Gaps = 3/231 (1%)






   
Genomic Context:






   
Comment:


















    ReferenceID:6869




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24011




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33483




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3433_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3433
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5485
                           PA0121_tr
                           translation of PA0121
                           244
                           99.18
                           99.59
                           0
                           1186.0
     

     
     
153238
                           gb|AAG03511.1|AE004450_6
                           (AE004450) hypothetical protein PA0121 [Pseudomonas aeruginosa PAO1]
                           244
                           99.18
                           99.59
                           0
                           1186.0
     

     
     
153239
                           gb|AAO57133.1|
                           (AE016869) transcriptional regulator, GntR family [Pseudomonas syringae pv. tomato str. DC3000]
                           262
                           34.35
                           46.56
                           31
                           303.0
     

     
     
153240
                           gb|AAN69863.1|AE016625_6
                           (AE016790) transcriptional regulator, GntR family [Pseudomonas putida KT2440]
                           261
                           33.71
                           47.89
                           27
                           304.0
     

     






      

          
GC ORFID: 46435How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0121Glimmer Score: 

          
Start: 5940256Stop: 5940990

          
Length: 735


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0121 translation of PA0121Homolog Bit Score 461.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene826 (ORF: BLASTX 127.0), t_PA0121 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGTCGGATTCGACGCACGTACCCAGCAGGGCGCCGCGCTGCGCCCCACCAGCCATTTCGTCTACGAAAGC 
ATCTACACGGCGATCCTGGAAAAGCGCCTGGCGCCGGCCGCCAAGCTGAGCAAGGAAACCCTCGGGCAGATC 
TTCCGGGTCAGCAACGGCACCATCCAGCGTGCCCTCACCCGTCTCGCCGAGGACGGCGCGGTGGTGATGCCG 
CCGAAGGAGGTCGCCAGCGTCGCCCGCCCGGACGAGCGCCAGGCGCGGCAGGTGCTGGACGCGCGCCTGCTG 
GTGGAAAGCGAAGTGGTGCGGCAACTGCCCGCGGGGCTGGATCCCGCCGCCCTTGCCGAGCTGCGGGCGCTG 
GTCGACGAGGAGCAGGCTTGCCTCGCGGCCCGCGACAGCGCCGGGCTGATCCGTCTCGCCGGGCGCTTCCAC 
CTGCGCCTGGCCGAACTGACCGAGAATCCCTTGCTGCAGGGTTTCGTCCGCGGCCTGGTGGCACGCGCCTCG 
CTGGACATCGCGCTGAACAAGGGGGCGGTCTATACCGCCGAGGCCTGCGCCGCGCAGCGCGCCTTGCTCGAT 
GCCCTGGAGGACGGCGACAGCGCGGCGGCGGCTGCGCTGATGGACGCTTACCTGCGAGGCCTGTTCGCCCGC 
ATGCGCTTCCTGCCGCCACCTACCACCGACCTGCGCGAGGCATTCGGCATGAAGGCCCCTCGTGGGGAAAAA 
CGCCGGAGGGCCTGA