ViewGene
Locus Name:
GeneID:
Location:

GeneID:3431
TrivialName: PA14_65590
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_65590
PAO1 Ortholog Locus:PA4963
Sequence Length:711
Protein Length:236
Start: 5843319
Stop: 5842609
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08348.1|AE004909_4 (AE004909) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 234/236 (99%), Positives = 235/236 (99%)
Sequence:
ATGAGCGCGTGGCGCGTCTTCGCATGTCTTTCCCTCGTCAGCCTGCTCGGGCTGACGGGTTGTGCGGTCCAT
CCGCCGGCCCAGCTCTACCAGTTGGACGTCGGTGCCGCCGCAGTACCGAAAAAGGATGGCGGTGCGGCCGTC
CTGCTCGGCCCGGTACAACTGGCCGACTATCTCAAGCGCGATGTGATGGTGCAGCGGCAGGCCGACGGTATT
CTCAGCCTGTCCACCGACGCACGCTGGGCCGGCAACCTGGAGACCAATGTCAGCCAGCAACTGCTGCGGCAG
ATGTCCAGCGAGCTGGGCAGCAGCCGCCTGGCGCTGTTCCCGGAAAAACCTGGTTTCACCCCCCAGGTCCAG
GTGATGCTGACCATCAGTCGCCTCGACTCCGGCCCCAAGCAGCCGGCGGTGATCGAGGCGCGCTGGCGCCTG
CTGGACCAGAAGGGCGACCTGAAGGACAGCCGGGTGTTCCACGAGGAAGAACGGCACCAGGGCAGCATCGGC
GACCAGATCCGTGCCCAGAGCGACCTGCTCAAGCGCCTGGCGGCGCAGTTGGCCAAGGACGTCAAGCCGATC
GCCGTGGCGGCCGAGGCGCCGCCGCCGGCGACCGCGCGCAAGCCGGTGGCCAAGCCGAAGGCCAAGGAAGAG
GAAGGTCCGAAAATGCCGCTGGTGGTGCCGATTCGCACCGATGCCGAGGTCTATCGGTTCTGA
Translation:
MSAWRVFACLSLVSLLGLTGCAVHPPAQLYQLDVGAAAVPKKDGGAAVLLGPVQLADYLKRDVMVQRQADGI
LSLSTDARWAGNLETNVSQQLLRQMSSELGSSRLALFPEKPGFTPQVQVMLTISRLDSGPKQPAVIEARWRL
LDQKGDLKDSRVFHEEERHQGSIGDQIRAQSDLLKRLAAQLAKDVKPIAVAAEAPPPATARKPVAKPKAKEE
EGPKMPLVVPIRTDAEVYRF*
AnnotationID:3439GeneID:3431
AnnotatorUID: diggins
Modification Date/Time: 2005-03-13 17:05:02
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA4963
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO58387.1| (AE016874) lipoprotein, putative [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 231

 Score =  231 bits (589), Expect = 3e-60
 Identities = 120/236 (50%), Positives = 163/236 (69%), Gaps = 5/236 (2%)








 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:6865




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24007




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:35026




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3431_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3431
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5483
                           PA4963_tr
                           translation of PA4963
                           236
                           99.15
                           99.57
                           0
                           1185.0
     

     
     
153230
                           gb|AAG08348.1|AE004909_4
                           (AE004909) hypothetical protein PA4963 [Pseudomonas aeruginosa PAO1]
                           236
                           99.15
                           99.57
                           0
                           1185.0
     

     
     
153232
                           gb|AAO58387.1|
                           (AE016874) lipoprotein, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           237
                           51.47
                           69.19
                           7
                           596.0
     

     
     
153231
                           gb|AAN70478.1|AE016689_6
                           (AE016792) conserved hypothetical protein [Pseudomonas putida KT2440]
                           256
                           46.09
                           64.45
                           25
                           599.0
     

     






      

          
GC ORFID: 46433How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4963Glimmer Score: 

          
Start: 5107000Stop: 5106290

          
Length: 711


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4963 translation of PA4963Homolog Bit Score 461.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3415 (ORF: BLASTX 236.0), t_PA4963 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCGCGTGGCGCGTCTTCGCATGTCTTTCCCTCGTCAGCCTGCTCGGGCTGACGGGTTGTGCGGTCCAT 
CCGCCGGCCCAGCTCTACCAGTTGGACGTCGGTGCCGCCGCAGTACCGAAAAAGGATGGCGGTGCGGCCGTC 
CTGCTCGGCCCGGTACAACTGGCCGACTATCTCAAGCGCGATGTGATGGTGCAGCGGCAGGCCGACGGTATT 
CTCAGCCTGTCCACCGACGCACGCTGGGCCGGCAACCTGGAGACCAATGTCAGCCAGCAACTGCTGCGGCAG 
ATGTCCAGCGAGCTGGGCAGCAGCCGCCTGGCGCTGTTCCCGGAAAAACCTGGTTTCACCCCCCAGGTCCAG 
GTGATGCTGACCATCAGTCGCCTCGACTCCGGCCCCAAGCAGCCGGCGGTGATCGAGGCGCGCTGGCGCCTG 
CTGGACCAGAAGGGCGACCTGAAGGACAGCCGGGTGTTCCACGAGGAAGAACGGCACCAGGGCAGCATCGGC 
GACCAGATCCGTGCCCAGAGCGACCTGCTCAAGCGCCTGGCGGCGCAGTTGGCCAAGGACGTCAAGCCGATC 
GCCGTGGCGGCCGAGGCGCCGCCGCCGGCGACCGCGCGCAAGCCGGTGGCCAAGCCGAAGGCCAAGGAAGAG 
GAAGGTCCGAAAATGCCGCTGGTGGTGCCGATTCGCACCGATGCCGAGGTCTATCGGTTCTGA