ViewGene

Locus Name:
GeneID:
Location:

GeneID:3430
TrivialName: PA14_62470
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_62470
PAO1 Ortholog Locus:PA4721
Sequence Length:708
Protein Length:235
Start: 5572952
Stop: 5572245
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08107.1|AE004885_12 (AE004885) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 233/235 (99%), Positives = 234/235 (99%)
Sequence:
ATGCGTTTCGAGCAGCCACTGGAAGAAGGCCGCCTGCTGCGTCGCTACAAGCGTTTCCTCGCCGATATCGAG
AGCGCCGGCGGCGAGCGCCTGACCATCCACTGTCCGAATACCGGTTCGATGCTCAATTGCATGAGCGAAGGT
TGCCGGGTCTGGTTCAGCCGCTCCAACGACCCCAAGCGCAAGCTGCCGGGGACCTGGGAGCTGAGCGAGACT
CCGCAGGGCCGCCTGGCCTGCGTCAACACGGCGCGGGCCAACCGCCTGGTAGAGGAGGCGCTGCTGGCCGGG
GACATCGCGGAGCTTGCCGGTTTCACCGCTCTGCGCCGGGAAGTGGCCTACGGCGTGGAGAACAGTCGCGCC
GACTTTCGCCTGGAATACCCCACGGGCGCACTGTTCATCGAGGTGAAGAGCGTCACCCTGGGCTTCGACGAA
ACCGCCGTGGCGGCCTTTCCCGACGCGGTGACGCTGCGCGGCGCCAAGCACCTGCGCGAACTGGCGGCGCTG
GCGCGGGAGGGGATCCGCGCGGTGCAGTTGTACTGCGTGAACCTTTCCGGGGCCGAGGCGGTGCGCCCCGCC
GACGAGATCGATCCAGCCTATGGCAAGGCGTTGCGCGAGGCGGCGCAAGCGGGCGTCGAGGTGCTGGCCTAT
GGCGCCGAGGTGACGACGGAAGGATTGCACCTGGCGCGGCGCCTCCCGGTGCGACTCTGA
Translation:
MRFEQPLEEGRLLRRYKRFLADIESAGGERLTIHCPNTGSMLNCMSEGCRVWFSRSNDPKRKLPGTWELSET
PQGRLACVNTARANRLVEEALLAGDIAELAGFTALRREVAYGVENSRADFRLEYPTGALFIEVKSVTLGFDE
TAVAAFPDAVTLRGAKHLRELAALAREGIRAVQLYCVNLSGAEAVRPADEIDPAYGKALREAAQAGVEVLAY
GAEVTTEGLHLARRLPVRL*
AnnotationID:3438GeneID:3430
AnnotatorUID: diggins
Modification Date/Time: 2005-03-09 06:06:52
Gene Name:
Confidence Code:3
GeneProduct:putative sugar fermentation stimulation protein
Cell Localization:()
Synonyms:sfsA
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(5) Carbon compound catabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam03749
Secondary Functional Category(ies):transcriptional regulators
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN70264.1|AE016666_8 (AE016791) sugar fermentation stimulation protein [Pseudomonas
           putida KT2440]
          Length = 237

 Score =  356 bits (914), Expect = 5e-98
 Identities = 178/235 (75%), Positives = 198/235 (84%)

>gb|AAO54505.1| (AE016859) sugar fermentation stimulation protein [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 237

 Score =  355 bits (911), Expect = 1e-97
 Identities = 177/233 (75%), Positives = 196/233 (84%)

>gb|AAN78673.1|AE016755_173 (AE016755) Sugar fermentation stimulation protein A [Escherichia
           coli CFT073]
          Length = 234

 Score =  224 bits (572), Expect = 2e-58
 Identities = 120/236 (50%), Positives = 155/236 (65%), Gaps = 3/236 (1%)

Structural Features:
pfam03749, SfsA, Sugar fermentation stimulation protein.
CD-Length = 215 residues, 100.0% aligned
Score =  265 bits (678), Expect = 4e-72
Identities = 122/220 (55%), Positives = 142/220 (64%), Gaps = 5/220 (2%)
Genomic Context:
Comment:
ReferenceID:6863
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:24005
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:37638
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:3430_cdd.html
URL:
ReferenceID:38165
Author/Investigator(s): Takeda K, Akimoto C, Kawamukai M.
Title: Effects of the Escherichia coli sfsA gene on mal genes expression and a DNA binding activity of SfsA.
PubMed: 11272834
MedLine:
Source:
Biosci Biotechnol Biochem. 2001 Jan;65(1):213-7.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11272834&query_hl=6
Homologs By Global Alignment
Gene ID:3430

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
5482 PA4721_tr translation of PA4721 235 99.14 99.57 0 1186.0
153193 gb|AAG08107.1|AE004885_12 (AE004885) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] 235 99.14 99.57 0 1186.0
153194 gb|AAN70264.1|AE016666_8 (AE016791) sugar fermentation stimulation protein [Pseudomonas putida KT2440] 237 75.10 83.54 2 914.0
153195 gb|AAO54505.1| (AE016859) sugar fermentation stimulation protein [Pseudomonas syringae pv. tomato str. DC3000] 237 74.68 82.70 2 909.0
153205 dbj|BAC60762.1| (AP005081) sugar fermentation stimulation protein [Vibrio parahaemolyticus] 241 51.45 62.65 9 552.0
GC ORFID: 46432How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA4721Glimmer Score:
Start: 4836632Stop: 4835925
Length: 708
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA4721 translation of PA4721Homolog Bit Score 461.0
Other Homologs: psyr_15may02_Scaffold15_revised_gene2507 (ORF: BLASTX 358.0), t_PA4721 (ORF: GLIMMER)
GC ORF Sequence
ATGCGTTTCGAGCAGCCACTGGAAGAAGGCCGCCTGCTGCGTCGCTACAAGCGTTTCCTCGCCGATATCGAG
AGCGCCGGCGGCGAGCGCCTGACCATCCACTGTCCGAATACCGGTTCGATGCTCAATTGCATGAGCGAAGGT
TGCCGGGTCTGGTTCAGCCGCTCCAACGACCCCAAGCGCAAGCTGCCGGGGACCTGGGAGCTGAGCGAGACT
CCGCAGGGCCGCCTGGCCTGCGTCAACACGGCGCGGGCCAACCGCCTGGTAGAGGAGGCGCTGCTGGCCGGG
GACATCGCGGAGCTTGCCGGTTTCACCGCTCTGCGCCGGGAAGTGGCCTACGGCGTGGAGAACAGTCGCGCC
GACTTTCGCCTGGAATACCCCACGGGCGCACTGTTCATCGAGGTGAAGAGCGTCACCCTGGGCTTCGACGAA
ACCGCCGTGGCGGCCTTTCCCGACGCGGTGACGCTGCGCGGCGCCAAGCACCTGCGCGAACTGGCGGCGCTG
GCGCGGGAGGGGATCCGCGCGGTGCAGTTGTACTGCGTGAACCTTTCCGGGGCCGAGGCGGTGCGCCCCGCC
GACGAGATCGATCCAGCCTATGGCAAGGCGTTGCGCGAGGCGGCGCAAGCGGGCGTCGAGGTGCTGGCCTAT
GGCGCCGAGGTGACGACGGAAGGATTGCACCTGGCGCGGCGCCTCCCGGTGCGACTCTGA