ViewGene

Locus Name:
GeneID:
Location:

GeneID: 343

TrivialName: PA14_19400

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_19400

PAO1 Ortholog Locus: PA3456

Sequence Length: 1965

Protein Length: 654

Start: 1678738

Stop: 1676774

Strand: -

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG06844.1|AE004766_5 (AE004766) hypothetical protein [Pseudomonas aeruginosa PAO1] Identities = 648/654 (99%), Positives = 652/654 (99%)

Sequence:

ATGTCCGACTTCCAGCATGCCCAGCTCGACTGGGACGAAAACGGCCAGCCGCTATCCCGCGCCTTCGGCGAC
GTATATTTTTCCCGGCATTCCGGGCTCAACGAGACGCGCCATGTGTTCCTCGCCACCAACCGCCTGGCCGAG
CGCTTCGCCGCGCTGGGCGACGGCGAGGTGCTGTGTATCGGTGAGACCGGCTTCGGCACCGGACTGAACTTC
CTCTGCGCCTGGCAGCTGTTCGAGCAGGTCGCGCCGGCCGGCGCGCGCCTGGAGTTCGTCAGCGTGGAGAAA
TTCCCCCTCGCCGCCGCCGACCTGCGCCGCGCCCTGGCGCTATGGCCGGAACTGGCGCCCTGGAGCGAGGCC
CTGCTGGGCCAGTACCTTGCCGTGCACCCGGGCTTCCAGCGCCTGGCGTTCGCGGGCGGAAGGATCGGCCTG
ACCCTGCTGCTGGGCGATGCCCTGGAGTGCCTGCCGCAGCTCGACGCGCGGGTCGACGCCTGGTTCCTCGAC
GGCTTCGCCCCGGCGAAGAACCCGGACATGTGGTCGCCCGCGCTGTTCGCCGAACTGGCGCGACTGTCGGCG
CCGCAGGCGACCCTGGGCACCTTCACCAGCGCCGGTTTCGTCCGCCGCGGGCTGATCGAGGCCGGTTTCGCC
ATGCAACGGGTACCGGGCTACGGGCAGAAGCGCGAGATGCTCGGCGGCACCTACCAGGGGCCGCCGGCGAAC
GCCGGCAAGCCCTGGTACGCACGCCCCGCGCCCCACGCCGGGCGCCGCGCGGCACTGGTGGTCGGCGGCGGC
CTGGCCGGCTGCGCCAGCGCCGCCAGCCTCGCCGCGCGCGGCTGGCAGGTGACCCTGATCGAACGCCATCCC
GGCCTCGCCCGGGAAGCCTCGGGCAACCCCCAGGGCGTGCTCTACCTGAAACTCTCGGCCCACGGCACGCCG
CTGTCGCGCCTGGTGCTCAGCGGCTTCGGCCATACCCGCCGGCTGCTCGAACGCCTGCGGCGCGGCCACGAC
TGGGACGCCTGCGGCGTACTGCAACTGGCCTTCGACGCCAAGGAAGCGCAACGCCAGGCGCAACTGGCCGCA
GCCTTCCCCGCCGACCTGCTGCACGGCCTGGACCGCGAGCAGGCCGAGCGCCTCGCCGGCGTCGCCCTGCCC
GCCGGCGGCCTGTTCTATCCCGAAGCCGGCTGGGTCCATCCGCCCGCGCTGTGCCAGGCCCtGGCCGCcACC
CCCGGGATCACCCTGCTGAGCGGCCGGGCGGTACGCTTGCGCCGCGAGGGCGACGACTGGTGCGCCTACGCC
GGCGACGAATGCCTGGCCCGCGCGCCACTCGCGATCCTCGCCACCGCCGCCGACATCCGCGACTTCCCGCCC
GCCGCCGAGCTGCCGCTGAAGCGCATTCGCGGGCAGGTCACCCGCCTGCCGGCCACCCCGCAAAGCCGGGCG
CTGCGCACCGTGGTCTGCGCCGAGGGCTACGTCGCACCGCCGCGTGGCGACGAACACACCCTCGGCGCCAGC
TTCGACTTCAAGAGCGAAGACCTGGCGCCGACCCTCGCCGAACACCAGGGCAACCTCGAACTGCTGCGGGAG
ATATCCCCCGACCTGTTGCAGCGCCTGGGCGCCGACGACCTGCCGCTGGAGCGCCTGGAAGGCCGCGCGGCG
TTCCGCTGCACCAGCCCCGACTACCTGCCCCTGGTAGGCCCGCTGGCCGAGCGCGCGGCCTTCGACGAGGCC
TACGCGGTGCTCGCCCGTGACGCCCGCCAGGTGCCGGAGCGGGCCTGCCCCTGGCTGCCAGGCCTGTACCTG
AACAGCGGCCACGGCTCGCGCGGGCTGATCAGCGCGCCGCTGTCCGGCGAACTGCTGGCGGCGTGGATCTGC
GGCGAGCCGCTGCCGCTGCCGCGCGCGGTGGCCGAGGCCTGCCACCCGAACCGCTTCCTGCTGCGCGACCTG
GTGCGTGGGCAGCGCGGCTGA

Translation:

MSDFQHAQLDWDENGQPLSRAFGDVYFSRHSGLNETRHVFLATNRLAERFAALGDGEVLCIGETGFGTGLNF
LCAWQLFEQVAPAGARLEFVSVEKFPLAAADLRRALALWPELAPWSEALLGQYLAVHPGFQRLAFAGGRIGL
TLLLGDALECLPQLDARVDAWFLDGFAPAKNPDMWSPALFAELARLSAPQATLGTFTSAGFVRRGLIEAGFA
MQRVPGYGQKREMLGGTYQGPPANAGKPWYARPAPHAGRRAALVVGGGLAGCASAASLAARGWQVTLIERHP
GLAREASGNPQGVLYLKLSAHGTPLSRLVLSGFGHTRRLLERLRRGHDWDACGVLQLAFDAKEAQRQAQLAA
AFPADLLHGLDREQAERLAGVALPAGGLFYPEAGWVHPPALCQALAATPGITLLSGRAVRLRREGDDWCAYA
GDECLARAPLAILATAADIRDFPPAAELPLKRIRGQVTRLPATPQSRALRTVVCAEGYVAPPRGDEHTLGAS
FDFKSEDLAPTLAEHQGNLELLREISPDLLQRLGADDLPLERLEGRAAFRCTSPDYLPLVGPLAERAAFDEA
YAVLARDARQVPERACPWLPGLYLNSGHGSRGLISAPLSGELLAAWICGEPLPLPRAVAEACHPNRFLLRDL
VRGQRG*

AnnotationID:352 GeneID:343

AnnotatorUID: diggins

Modification Date/Time: 2005-04-18 21:09:50

Gene Name:

Confidence Code: 3

GeneProduct: putative D-amino acid oxidase family protein

Cell Localization: ()

Synonyms: PA3456

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (2) Amino acid biosynthesis and metabolism

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs: COG0665

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

>gb|AAN67371.1|AE016363_3 (AE016780) D-amino acid oxidase family protein [Pseudomonas putida
           KT2440]
          Length = 654

 Score =  918 bits (2372), Expect = 0.0
 Identities = 450/649 (69%), Positives = 526/649 (81%), Gaps = 1/649 (0%)

>gb|AAO55159.1| (AE016861) oxidoreductase, FAD-binding [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 660

 Score =  878 bits (2269), Expect = 0.0
 Identities = 438/657 (66%), Positives = 507/657 (77%), Gaps = 6/657 (0%)

>gb|AAL21280.1| (AE008807) putative peptidase [Salmonella typhimurium LT2]
          Length = 686

 Score =  447 bits (1150), Expect = e-124
 Identities = 279/665 (41%), Positives = 359/665 (53%), Gaps = 25/665 (3%)

Structural Features:

COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) 
[Amino acid transport and metabolism]
CD-Length = 387 residues,  94.8% aligned
Score =  114 bits (286), Expect = 3e-26
Identities = 97/397 (24%), Positives = 133/397 (33%), Gaps = 52/397 (13%)

Genomic Context:

Comment:

ReferenceID:689

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:17831

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:32114

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 343_cdd.html

URL:

Homologs By Global Alignment

Gene ID:343

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

574 PA3456_tr translation of PA3456 654 99.08 99.69 0 3417.0

27751 gb|AAG06844.1|AE004766_5 (AE004766) hypothetical protein PA3456 [Pseudomonas aeruginosa PAO1] 654 99.08 99.69 0 3417.0

27752 gb|AAN67371.1|AE016363_3 (AE016780) D-amino acid oxidase family protein [Pseudomonas putida KT2440] 656 68.59 80.33 4 2369.0

27753 gb|AAO55159.1| (AE016861) oxidoreductase, FAD-binding [Pseudomonas syringae pv. tomato str. DC3000] 662 66.31 76.73 10 2270.0

27754 gb|AAQ59616.1| (AE016916) probable peptidase [Chromobacterium violaceum ATCC 12472] 669 58.44 68.31 24 1894.0

GC ORFID: `43345`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA3456`	Glimmer Score:
Start: `3275194`	Stop: `3277158`
Length: `1965`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog: `t_PA3456 translation of PA3456`	Homolog Bit Score `1320.0`
Other Homologs: `psyr_15may02_Scaffold5_revised_gene5984 (ORF: BLASTX 897.0), t_PA3456 (ORF: GLIMMER)`
GC ORF Sequence
ATGTCCGACTTCCAGCATGCCCAGCTCGACTGGGACGAAAACGGCCAGCCGCTATCCCGCGCCTTCGGCGAC GTATATTTTTCCCGGCATTCCGGGCTCAACGAGACGCGCCATGTGTTCCTCGCCACCAACCGCCTGGCCGAG CGCTTCGCCGCGCTGGGCGACGGCGAGGTGCTGTGTATCGGTGAGACCGGCTTCGGCACCGGACTGAACTTC CTCTGCGCCTGGCAGCTGTTCGAGCAGGTCGCGCCGGCCGGCGCGCGCCTGGAGTTCGTCAGCGTGGAGAAA TTCCCCCTCGCCGCCGCCGACCTGCGCCGCGCCCTGGCGCTATGGCCGGAACTGGCGCCCTGGAGCGAGGCC CTGCTGGGCCAGTACCTTGCCGTGCACCCGGGCTTCCAGCGCCTGGCGTTCGCGGGCGGAAGGATCGGCCTG ACCCTGCTGCTGGGCGATGCCCTGGAGTGCCTGCCGCAGCTCGACGCGCGGGTCGACGCCTGGTTCCTCGAC GGCTTCGCCCCGGCGAAGAACCCGGACATGTGGTCGCCCGCGCTGTTCGCCGAACTGGCGCGACTGTCGGCG CCGCAGGCGACCCTGGGCACCTTCACCAGCGCCGGTTTCGTCCGCCGCGGGCTGATCGAGGCCGGTTTCGCC ATGCAACGGGTACCGGGCTACGGGCAGAAGCGCGAGATGCTCGGCGGCACCTACCAGGGGCCGCCGGCGAAC GCCGGCAAGCCCTGGTACGCACGCCCCGCGCCCCACGCCGGGCGCCGCGCGGCACTGGTGGTCGGCGGCGGC CTGGCCGGCTGCGCCAGCGCCGCCAGCCTCGCCGCGCGCGGCTGGCAGGTGACCCTGATCGAACGCCATCCC GGCCTCGCCCGGGAAGCCTCGGGCAACCCCCAGGGCGTGCTCTACCTGAAACTCTCGGCCCACGGCACGCCG CTGTCGCGCCTGGTGCTCAGCGGCTTCGGCCATACCCGCCGGCTGCTCGAACGCCTGCGGCGCGGCCACGAC TGGGACGCCTGCGGCGTACTGCAACTGGCCTTCGACGCCAAGGAAGCGCAACGCCAGGCGCAACTGGCCGCA GCCTTCCCCGCCGACCTGCTGCACGGCCTGGACCGCGAGCAGGCCGAGCGCCTCGCCGGCGTCGCCCTGCCC GCCGGCGGCCTGTTCTATCCCGAAGCCGGCTGGGTCCATCCGCCCGCGCTGTGCCAGGCCCtGGCCGCcACC CCCGGGATCACCCTGCTGAGCGGCCGGGCGGTACGCTTGCGCCGCGAGGGCGACGACTGGTGCGCCTACGCC GGCGACGAATGCCTGGCCCGCGCGCCACTCGCGATCCTCGCCACCGCCGCCGACATCCGCGACTTCCCGCCC GCCGCCGAGCTGCCGCTGAAGCGCATTCGCGGGCAGGTCACCCGCCTGCCGGCCACCCCGCAAAGCCGGGCG CTGCGCACCGTGGTCTGCGCCGAGGGCTACGTCGCACCGCCGCGTGGCGACGAACACACCCTCGGCGCCAGC TTCGACTTCAAGAGCGAAGACCTGGCGCCGACCCTCGCCGAACACCAGGGCAACCTCGAACTGCTGCGGGAG ATATCCCCCGACCTGTTGCAGCGCCTGGGCGCCGACGACCTGCCGCTGGAGCGCCTGGAAGGCCGCGCGGCG TTCCGCTGCACCAGCCCCGACTACCTGCCCCTGGTAGGCCCGCTGGCCGAGCGCGCGGCCTTCGACGAGGCC TACGCGGTGCTCGCCCGTGACGCCCGCCAGGTGCCGGAGCGGGCCTGCCCCTGGCTGCCAGGCCTGTACCTG AACAGCGGCCACGGCTCGCGCGGGCTGATCAGCGCGCCGCTGTCCGGCGAACTGCTGGCGGCGTGGATCTGC GGCGAGCCGCTGCCGCTGCCGCGCGCGGTGGCCGAGGCCTGCCACCCGAACCGCTTCCTGCTGCGCGACCTG GTGCGTGGGCAGCGCGGCTGA