ViewGene

Locus Name:
GeneID:
Location:

GeneID:3429
TrivialName: PA14_58580
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_58580
PAO1 Ortholog Locus:PA4515
Sequence Length:681
Protein Length:226
Start: 5219801
Stop: 5220481
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07903.1|AE004865_4 (AE004865) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 225/226 (99%), Positives = 225/226 (99%)
Sequence:
ATGTTGCTGCATATTCCCGCCATCTTCACCGCCGAGGAAGTCTCCCGGATCCGCGCAGCCCTGGAGCAGGCG
GAATGGGCCGACGGCAAGGCGACCGCCGGCTACCAATCGGCCAAGGCCAAGCACAACCTGCAACTGCCGCAG
GACCACCCGCTGGCCCGGGAGATCGGCGAAGCCATGCTGCAGCGCCTGTGGAACCATCCCCTGTTCATGTCC
GCCGCCCTGCCGCTCAAGGTCTTCCCGCCGCTGTTCAACTGCTATACCGGCGGGGGCTCGTTCGACTTCCAC
ATCGACAACGCCGTGCGCGACGTCCATGGCGGCCGCGAGCGGGTCCGTACCGACCTGTCCTCGACCCTCTTC
TTCAGCGACCCGGAGGACTATGACGGCGGCGAACTGGTGATCCAGGACACCTACGGCCTGCAACAGGTGAAG
CTGCCCGCCGGCGATCTGGTGCTCTATCCCGGCACCAGCCTGCACAAGGTCAATCCGGTCACCCGCGGCGCG
CGCTACGCCTCGTTCTTCTGGACCCAGAGCCTGGTCCGCGAAGACAGTCAGCGCACCCTGCTATTCGAAATG
GACCAGTCGATCCAGCGACTCACCCACGACGTGCCCGACCATCCCTCGCTGATCCGCCTAACCGGCACCTAC
CACAATCTCCTGCGGCGCTGGTCGGAACTCTGA
Translation:
MLLHIPAIFTAEEVSRIRAALEQAEWADGKATAGYQSAKAKHNLQLPQDHPLAREIGEAMLQRLWNHPLFMS
AALPLKVFPPLFNCYTGGGSFDFHIDNAVRDVHGGRERVRTDLSSTLFFSDPEDYDGGELVIQDTYGLQQVK
LPAGDLVLYPGTSLHKVNPVTRGARYASFFWTQSLVREDSQRTLLFEMDQSIQRLTHDVPDHPSLIRLTGTY
HNLLRRWSEL*
AnnotationID:3437GeneID:3429
AnnotatorUID: danlee
Modification Date/Time: 2006-03-29 14:02:49
Gene Name:
Confidence Code:3
GeneProduct:putative iron-regulated protein
Cell Localization:()
Synonyms:PA4515, piuC
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3128,smart00702
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>emb|CAD86036.1| (BX321863) iron-regulated outer membrane protein [Nitrosomonas
           europaea ATCC 19718]
          Length = 227

 Score =  215 bits (547), Expect = 2e-55
 Identities = 106/226 (46%), Positives = 154/226 (68%), Gaps = 1/226 (0%)

Structural Features:
COG3128, PiuC, Uncharacterized iron-regulated protein 
CD-Length = 229 residues,  99.1% aligned
Score =  366 bits (941), Expect = 2e-102
Identities = 146/227 (64%), Positives = 173/227 (76%), Gaps = 1/227 (0%)

smart00702, P4Hc, Prolyl 4-hydroxylase alpha subunit homologues.
CD-Length = 178 residues,  98.3% aligned
Score =  100 bits (249), Expect = 4e-22
Identities = 51/184 (27%), Positives = 74/184 (40%), Gaps = 18/184 (9%)
Genomic Context:
Comment:
ReferenceID:6861
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:24003
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:31562
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:3429_cdd.html
URL:
Homologs By Global Alignment
Gene ID:3429

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
5481 PA4515_tr translation of PA4515 226 99.55 99.55 0 1186.0
153168 gb|AAG07903.1|AE004865_4 (AE004865) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] 226 99.55 99.55 0 1186.0
153169 gb|AAC06214.1| (AF051690) iron-uptake factor [Pseudomonas aeruginosa] 226 99.11 99.11 0 1178.0
153170 gb|AAN66487.1|AE016277_6 (AE016777) conserved hypothetical protein [Pseudomonas putida KT2440] 226 77.43 87.61 0 949.0
153174 emb|CAB53379.1| (AJ132742) hypothetical protein [Bordetella bronchiseptica] 226 66.37 80.53 0 805.0
GC ORFID: 46431How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA4515Glimmer Score:
Start: 4483480Stop: 4484160
Length: 681
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA4515 translation of PA4515Homolog Bit Score 461.0
Other Homologs: t_PA4515 (ORF: GLIMMER)
GC ORF Sequence
ATGTTGCTGCATATTCCCGCCATCTTCACCGCCGAGGAAGTCTCCCGGATCCGCGCAGCCCTGGAGCAGGCG
GAATGGGCCGACGGCAAGGCGACCGCCGGCTACCAATCGGCCAAGGCCAAGCACAACCTGCAACTGCCGCAG
GACCACCCGCTGGCCCGGGAGATCGGCGAAGCCATGCTGCAGCGCCTGTGGAACCATCCCCTGTTCATGTCC
GCCGCCCTGCCGCTCAAGGTCTTCCCGCCGCTGTTCAACTGCTATACCGGCGGGGGCTCGTTCGACTTCCAC
ATCGACAACGCCGTGCGCGACGTCCATGGCGGCCGCGAGCGGGTCCGTACCGACCTGTCCTCGACCCTCTTC
TTCAGCGACCCGGAGGACTATGACGGCGGCGAACTGGTGATCCAGGACACCTACGGCCTGCAACAGGTGAAG
CTGCCCGCCGGCGATCTGGTGCTCTATCCCGGCACCAGCCTGCACAAGGTCAATCCGGTCACCCGCGGCGCG
CGCTACGCCTCGTTCTTCTGGACCCAGAGCCTGGTCCGCGAAGACAGTCAGCGCACCCTGCTATTCGAAATG
GACCAGTCGATCCAGCGACTCACCCACGACGTGCCCGACCATCCCTCGCTGATCCGCCTAACCGGCACCTAC
CACAATCTCCTGCGGCGCTGGTCGGAACTCTGA