ViewGene
Locus Name:
GeneID:
Location:

GeneID:3428
TrivialName: PA14_23080
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_23080
PAO1 Ortholog Locus:PA3182
Sequence Length:717
Protein Length:238
Start: 2001615
Stop: 2002331
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06570.1|AE004742_6 (AE004742) 6-phosphogluconolactonase [Pseudomonas aeruginosa PAO1]
Identities = 233/238 (97%), Positives = 236/238 (99%)
Sequence:
ATGGCGATTTCTGAGTTGAAGCTGCCGGCCGGCGTCGGCCTGCAGGTCTGGGGCAGCGCCGCCGAGCAGGCC
CGCGGCCTGGCCGCCGAGGTCGCCGGCCGGTTGCGCTCGGCGCTGGCCGAGCAGGGCCAGGCGCTGCTGGTG
GTGTCCGGTGGGCGCAGTCCGGtgGCCTTCCTCGAAGCCTTGAGCGAGgatcaggtGGACTGGTCGCGGATC
ACCCTCAGCCTGGCCGACGAGCGCTGGGTGCCGGAGTCGCATGCCGATAGCAACGCCGGCCTGGTTCGCCGC
CACCTGCTCCGTGGCGAGGCGGCGAAGGCGCGCTTCATCGGCCTCTACCAGCCGGCGGCGAGCCTGGAGGAA
GCGGCCGAGCTGGCCGACCACCACCTGCACGAGCTGCCGTTGCCGATCGACGTGCTGGTCCTTGGCATGGGC
GACGACGGCCATACCGCCTCGCTGTTCCCGAACAGCCCTGGCCTGGACCTGGCGATGGATCCCCAGGGCACG
CGCCGTTGCCTGCCGATGTGGGCGCCGAGCGTGCCGCACCAGCGCCTGACCCTACCGCGCGCCGTGCTGGCG
GCGGCGAAGGTGCAGCTGCTGGCGATCCAGGGCCAGTCCAAGCTGGCCACCCTGAACACCGCGCTGGCGGTC
GAGGACGAACGGCGGATGCCGGTTCGCGCCTTCCTCCGCGCGCCGCTGACGATCCATTGGTACCCCTGA
Translation:
MAISELKLPAGVGLQVWGSAAEQARGLAAEVAGRLRSALAEQGQALLVVSGGRSPVAFLEALSEDQVDWSRI
TLSLADERWVPESHADSNAGLVRRHLLRGEAAKARFIGLYQPAASLEEAAELADHHLHELPLPIDVLVLGMG
DDGHTASLFPNSPGLDLAMDPQGTRRCLPMWAPSVPHQRLTLPRAVLAAAKVQLLAIQGQSKLATLNTALAV
EDERRMPVRAFLRAPLTIHWYP*
AnnotationID:3436GeneID:3428
AnnotatorUID: diggins
Modification Date/Time: 2005-04-14 06:06:43
Gene Name:pgl
Confidence Code:1
GeneProduct:6-phosphogluconolactonase
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(8) Central intermediary metabolism
Alternate Gene Product Name:glucosamine-6-phosphate isomerase/deaminase
Functional Category Confidence Code:5
COGs:COG0363
Secondary Functional Category(ies):carbohydrate transport and metabolism
EC Number:3.1.1.31
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN66648.1|AE016292_8 (AE016777) 6-phosphogluconolactonase [Pseudomonas putida KT2440]
          Length = 242

 Score =  286 bits (731), Expect = 9e-77
 Identities = 149/238 (62%), Positives = 179/238 (75%), Gaps = 1/238 (0%)

>emb|CAC14909.1| (AJ279003) putative 6-phosphogluconolactonase [Pseudomonas putida]
          Length = 242

 Score =  278 bits (710), Expect = 3e-74
 Identities = 146/238 (61%), Positives = 176/238 (73%), Gaps = 1/238 (0%)

>gb|AAO54825.1| (AE016860) 6-phosphogluconolactonase [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 237

 Score =  272 bits (695), Expect = 1e-72
 Identities = 140/238 (58%), Positives = 179/238 (75%), Gaps = 1/238 (0%)








 
Structural Features:
COG0363, NagB, 6-phosphogluconolactonase /
Glucosamine-6-phosphate isomerase / deaminase 
[Carbohydrate transport and metabolism]
CD-Length = 238 residues,  95.8% aligned
Score =  197 bits (503), Expect = 9e-52
Identities = 83/231 (35%), Positives = 121/231 (52%), Gaps = 9/231 (3%)






   
Genomic Context:






   
Comment:


















    ReferenceID:6859




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24001




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32362




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3428_cdd.html


    		




 
URL:

















    ReferenceID:32363




  
Author/Investigator(s):
        





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type: 







    
Data:


    		




 
URL:

















    ReferenceID:33963




  
Author/Investigator(s):
        Petruschka L, Adolf K, Burchhardt G, Dernedde J, Jurgensen J, Herrmann H.





  
Title:
        Analysis of the zwf-pgl-eda-operon in Pseudomonas putida strains H and KT2440.




  
PubMed:
        12393206


MedLine:
        




    
Source:
FEMS Microbiol Lett. 2002 Sep 24;215(1):89-95.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12393206

















    ReferenceID:33964




  
Author/Investigator(s):
        Hager PW, Calfee MW, Phibbs PV.





  
Title:
        The Pseudomonas aeruginosa devB/SOL homolog, pgl, is a member of the hex regulon and encodes 6-phosphogluconolactonase.




  
PubMed:
        10869070


MedLine:
        




    
Source:
J Bacteriol. 2000 Jul;182(14):3934-41.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=10869070









           
Homologs By Global Alignment 

           

       



     
Gene ID:3428
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5480
                           PA3182_tr
                           translation of PA3182
                           238
                           97.89
                           99.15
                           0
                           1187.0
     

     
     
153152
                           gb|AAG06570.1|AE004742_6
                           (AE004742) 6-phosphogluconolactonase [Pseudomonas aeruginosa PAO1]
                           238
                           97.89
                           99.15
                           0
                           1187.0
     

     
     
153153
                           gb|AAD22666.1|
                           (AF029673) 6-phosphogluconolactonase [Pseudomonas aeruginosa]
                           243
                           95.88
                           97.11
                           5
                           1187.0
     

     
     
153154
                           gb|AAN66648.1|AE016292_8
                           (AE016777) 6-phosphogluconolactonase [Pseudomonas putida KT2440]
                           243
                           61.31
                           73.66
                           6
                           733.0
     

     
     
153155
                           emb|CAC14909.1|
                           (AJ279003) putative 6-phosphogluconolactonase [Pseudomonas putida]
                           243
                           60.08
                           72.42
                           6
                           712.0
     

     






      

          
GC ORFID: 46430How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3182Glimmer Score: 

          
Start: 2952316Stop: 2951600

          
Length: 717


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3182 translation of PA3182Homolog Bit Score 461.0

          
Other Homologs:  psyr_15may02_Scaffold3_revised_gene4425 (ORF: BLASTX 283.0), t_PA3182 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCGATTTCTGAGTTGAAGCTGCCGGCCGGCGTCGGCCTGCAGGTCTGGGGCAGCGCCGCCGAGCAGGCC 
CGCGGCCTGGCCGCCGAGGTCGCCGGCCGGTTGCGCTCGGCGCTGGCCGAGCAGGGCCAGGCGCTGCTGGTG 
GTGTCCGGTGGGCGCAGTCCGGtgGCCTTCCTCGAAGCCTTGAGCGAGgatcaggtGGACTGGTCGCGGATC 
ACCCTCAGCCTGGCCGACGAGCGCTGGGTGCCGGAGTCGCATGCCGATAGCAACGCCGGCCTGGTTCGCCGC 
CACCTGCTCCGTGGCGAGGCGGCGAAGGCGCGCTTCATCGGCCTCTACCAGCCGGCGGCGAGCCTGGAGGAA 
GCGGCCGAGCTGGCCGACCACCACCTGCACGAGCTGCCGTTGCCGATCGACGTGCTGGTCCTTGGCATGGGC 
GACGACGGCCATACCGCCTCGCTGTTCCCGAACAGCCCTGGCCTGGACCTGGCGATGGATCCCCAGGGCACG 
CGCCGTTGCCTGCCGATGTGGGCGCCGAGCGTGCCGCACCAGCGCCTGACCCTACCGCGCGCCGTGCTGGCG 
GCGGCGAAGGTGCAGCTGCTGGCGATCCAGGGCCAGTCCAAGCTGGCCACCCTGAACACCGCGCTGGCGGTC 
GAGGACGAACGGCGGATGCCGGTTCGCGCCTTCCTCCGCGCGCCGCTGACGATCCATTGGTACCCCTGA