ViewGene
Locus Name:
GeneID:
Location:

GeneID:3427
TrivialName: PA14_50420
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_50420
PAO1 Ortholog Locus:PA1083
Sequence Length:696
Protein Length:231
Start: 4480813
Stop: 4480118
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04472.1|AE004539_14 (AE004539) flagellar L-ring protein precursor FlgH [Pseudomonas aeruginosa PAO1]
Identities = 230/231 (99%), Positives = 231/231 (100%)
Sequence:
ATGAACCGGCTGATGATCGTCTCCCTGCTTGGCATCGCCACCGCCCTGGGCGGTTGCGTCAGCCCACCGCCG
AAGCCGAACGATCCGTACTACGCGCCGGTGCTGCCGCGCACCCCGCTGCCCGCCGCGCAGAACAACGGCGCG
ATCTACCAGGCCGGCTTCGAGCAGAACCTCTACGACGACCGCAAGGCCTTCCGCGTGGGCGACATCATTACC
ATCACCCTCAACGAGAAGACCCAGGCGAGCAAGAAAGCCAACTCCGATATCCAGAAGGACAGCAAGACCAAG
ATGGGGCTGACCTCGCTGTTCGGTAGCGGCATGACCACCAACAACCCGATCGGCGGCGGTGACCTCAGCCTC
AGCGCCGAATACGGCGGCTCGCGCGACGCCAAGGGCGACAGCCAGGCGGGGCAGAGCAACAGCCTGACCGGC
TCGATCACCGTGACCGTGGCCGAGGTGCTGCCCAACGGCATCCTCTCCGTGCGCGGCGAGAAGTGGATGACC
CTGAACACCGGCAACGAGCTGGTGCGCATCGCCGGCCTGGTCCGCGCCGACGATATCGCCACCGACAACACC
GTGTCCTCGACCCGCGTGGCCGACGCCCGGATCACCTATTCCGGCACCGGCGCTTTCGCCGATGCCAGTCAG
CCGGGCTGGCTGGACCGCTTCTTCCTCAGCCCGCTGTGGCCGTTCTGA
Translation:
MNRLMIVSLLGIATALGGCVSPPPKPNDPYYAPVLPRTPLPAAQNNGAIYQAGFEQNLYDDRKAFRVGDIIT
ITLNEKTQASKKANSDIQKDSKTKMGLTSLFGSGMTTNNPIGGGDLSLSAEYGGSRDAKGDSQAGQSNSLTG
SITVTVAEVLPNGILSVRGEKWMTLNTGNELVRIAGLVRADDIATDNTVSSTRVADARITYSGTGAFADASQ
PGWLDRFFLSPLWPF*
AnnotationID:3435GeneID:3427
AnnotatorUID: danlee
Modification Date/Time: 2004-05-20 16:04:39
Gene Name:flgH
Confidence Code:2
GeneProduct:flagellar L-ring protein precursor FlgH
Cell Localization:()
Synonyms:PA1083
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(16) Motility & Attachment
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2063, pfam02107
Secondary Functional Category(ies):Cell wall / LPS / capsule
EC Number:
Status:ACTIVE
Pathway:
Flagella assembly 
Homology:






 
Structural Features:
COG2063, FlgH, Flagellar basal body L-ring protein [Cell motility and secretion]
       CD-Length = 230 residues,  99.6% aligned
       Score =  229 bits (584), Expect = 3e-61
pfam02107, FlgH, Flagellar L-ring protein. Score: 175, 5e-45






   
Genomic Context:
Cluster of flagellar biosynthetic genes from flgB through flgL 






   
Comment:


















    ReferenceID:6857




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23999




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3427
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5479
                           PA1083_tr
                           translation of PA1083
                           231
                           99.56
                           99.99
                           0
                           1186.0
     

     
     
153131
                           gb|AAG04472.1|AE004539_14
                           (AE004539) flagellar L-ring protein precursor FlgH [Pseudomonas aeruginosa PAO1]
                           231
                           99.56
                           99.99
                           0
                           1186.0
     

     
     
153132
                           gb|AAN69962.1|AE016634_11
                           (AE016790) flagellar L-ring protein precursor FlgH [Pseudomonas putida KT2440]
                           231
                           80.95
                           86.58
                           0
                           969.0
     

     
     
153133
                           gb|AAO55459.1|
                           (AE016862) flagellar L-ring protein FlgH [Pseudomonas syringae pv. tomato str. DC3000]
                           238
                           78.57
                           85.29
                           8
                           949.0
     

     
     
153134
                           gb|AAA62845.1|
                           (L15385) flagellar L-ring protein [Pseudomonas putida]
                           250
                           55.60
                           61.20
                           38
                           640.0
     

     






      

          
GC ORFID: 46429How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1083Glimmer Score: 

          
Start: 473095Stop: 473790

          
Length: 696


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1083 translation of PA1083Homolog Bit Score 461.0

          
Other Homologs:  psyr_15may02_Scaffold8_revised_gene7898 (ORF: BLASTX 365.0), t_PA1083 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAACCGGCTGATGATCGTCTCCCTGCTTGGCATCGCCACCGCCCTGGGCGGTTGCGTCAGCCCACCGCCG 
AAGCCGAACGATCCGTACTACGCGCCGGTGCTGCCGCGCACCCCGCTGCCCGCCGCGCAGAACAACGGCGCG 
ATCTACCAGGCCGGCTTCGAGCAGAACCTCTACGACGACCGCAAGGCCTTCCGCGTGGGCGACATCATTACC 
ATCACCCTCAACGAGAAGACCCAGGCGAGCAAGAAAGCCAACTCCGATATCCAGAAGGACAGCAAGACCAAG 
ATGGGGCTGACCTCGCTGTTCGGTAGCGGCATGACCACCAACAACCCGATCGGCGGCGGTGACCTCAGCCTC 
AGCGCCGAATACGGCGGCTCGCGCGACGCCAAGGGCGACAGCCAGGCGGGGCAGAGCAACAGCCTGACCGGC 
TCGATCACCGTGACCGTGGCCGAGGTGCTGCCCAACGGCATCCTCTCCGTGCGCGGCGAGAAGTGGATGACC 
CTGAACACCGGCAACGAGCTGGTGCGCATCGCCGGCCTGGTCCGCGCCGACGATATCGCCACCGACAACACC 
GTGTCCTCGACCCGCGTGGCCGACGCCCGGATCACCTATTCCGGCACCGGCGCTTTCGCCGATGCCAGTCAG 
CCGGGCTGGCTGGACCGCTTCTTCCTCAGCCCGCTGTGGCCGTTCTGA