ViewGene
Locus Name:
GeneID:
Location:

GeneID:3426
TrivialName: PA14_54300
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_54300
PAO1 Ortholog Locus:PA0772
Sequence Length:702
Protein Length:233
Start: 4817568
Stop: 4816867
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04161.1|AE004512_4 (AE004512) DNA repair protein RecO [Pseudomonas aeruginosa PAO1]
Identities = 232/233 (99%), Positives = 233/233 (100%)
Sequence:
ATGTCCTTCGCCGCCGCCCAAGCCACCTACGTGCTGCATAGCCGGCCGTACAAGGAAACCAGCGCCCTGGTG
GACTTCTTCACCCCGCTGGGTCGCCTGCGCGCGGTCCTGCGCGGCGCCCGCGGCAAGGCCGGCGCCCTGGCG
CGGCCATTCGTGCCGCTGGAAGCGGAGTGGCGCGGACGCGGCGAACTGAAGACCGTGGCCCGCCTGGAAAGC
GCCGGCATTCCCAACCTGCTCAATGGCCAGGCGCTGTTCAGCGGTCTCTACCTCAACGAGCTGTTGATCCGC
CTGTTGCCGGCGGAAGACCCGCAGCCGGAAATCTTCGCCCACTACGCCGCGACCCTGCCGCTGCTGGCGGCG
GGGCGACCCATCGAACCGCTGCTGCGCGCGTTCGAATGGCGCCTGCTGGAGCAACTGGGCTATGGTTTCGCT
CTCGATGTCGATATCGATGGGCGCCCGATCGAGCCGCAGGCGTTGTACCAGCTTTTGCCAGAGGCCGGCCTG
GAGCCGGTGGCGCAACTGCAACCCGGGCTGTTCCAGGGCTCCGAACTGTTATCCATGGCCGACGCCGACTGG
AGCGCCCCCGGCGCCCTGGCGGCGGCCAAGCGCCTGATGCGCCAGGCGCTCGCTCCCCATCTGGGCGGCCGG
CCGCTGGTCAGCCGCGAGCTGTTCATGAACCGTAAGGAGTCACCCCGTGACTGA
Translation:
MSFAAAQATYVLHSRPYKETSALVDFFTPLGRLRAVLRGARGKAGALARPFVPLEAEWRGRGELKTVARLES
AGIPNLLNGQALFSGLYLNELLIRLLPAEDPQPEIFAHYAATLPLLAAGRPIEPLLRAFEWRLLEQLGYGFA
LDVDIDGRPIEPQALYQLLPEAGLEPVAQLQPGLFQGSELLSMADADWSAPGALAAAKRLMRQALAPHLGGR
PLVSRELFMNRKESPRD*
AnnotationID:3434GeneID:3426
AnnotatorUID: danlee
Modification Date/Time: 2004-04-14 17:05:06
Gene Name:recO
Confidence Code:2
GeneProduct:DNA repair protein RecO
Cell Localization:()
Synonyms:PA0772
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(11) DNA replication, recombination, modification and repair
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1381, pfam02565
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG1381, RecO, Recombinational DNA repair protein (RecF Pathway). Score: 150, 2e-37
pfam02565, RecO, Recombination protein O.  Score: 90.0, 5e-19






   
Genomic Context:
The gene sequence lepA-lepB-rnc-era-recO-pdxJ is found in both E. coli and P. aeruginosa. 






   
Comment:


















    ReferenceID:6855




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23997




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3426
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5478
                           PA0772_tr
                           translation of PA0772
                           233
                           99.57
                           99.99
                           0
                           1185.0
     

     
     
153105
                           gb|AAG04161.1|AE004512_4
                           (AE004512) DNA repair protein RecO [Pseudomonas aeruginosa PAO1]
                           233
                           99.57
                           99.99
                           0
                           1185.0
     

     
     
153106
                           gb|AAD40231.1|AF123492_3
                           (AF123492) RecO [Pseudomonas aeruginosa]
                           233
                           83.26
                           83.69
                           30
                           988.0
     

     
     
153107
                           gb|AAO57671.1|
                           (AE016871) DNA repair protein RecO [Pseudomonas syringae pv. tomato str. DC3000]
                           233
                           70.81
                           80.68
                           6
                           843.0
     

     
     
153108
                           gb|AAN67057.1|AE016334_6
                           (AE016779) DNA repair protein RecO [Pseudomonas putida KT2440]
                           233
                           66.09
                           75.96
                           6
                           773.0
     

     






      

          
GC ORFID: 46428How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0772Glimmer Score: 

          
Start: 136339Stop: 137040

          
Length: 702


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0772 translation of PA0772Homolog Bit Score 461.0

          
Other Homologs:  psyr_15may02_Scaffold5_revised_gene6221 (ORF: BLASTX 328.0), t_PA0772 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCCTTCGCCGCCGCCCAAGCCACCTACGTGCTGCATAGCCGGCCGTACAAGGAAACCAGCGCCCTGGTG 
GACTTCTTCACCCCGCTGGGTCGCCTGCGCGCGGTCCTGCGCGGCGCCCGCGGCAAGGCCGGCGCCCTGGCG 
CGGCCATTCGTGCCGCTGGAAGCGGAGTGGCGCGGACGCGGCGAACTGAAGACCGTGGCCCGCCTGGAAAGC 
GCCGGCATTCCCAACCTGCTCAATGGCCAGGCGCTGTTCAGCGGTCTCTACCTCAACGAGCTGTTGATCCGC 
CTGTTGCCGGCGGAAGACCCGCAGCCGGAAATCTTCGCCCACTACGCCGCGACCCTGCCGCTGCTGGCGGCG 
GGGCGACCCATCGAACCGCTGCTGCGCGCGTTCGAATGGCGCCTGCTGGAGCAACTGGGCTATGGTTTCGCT 
CTCGATGTCGATATCGATGGGCGCCCGATCGAGCCGCAGGCGTTGTACCAGCTTTTGCCAGAGGCCGGCCTG 
GAGCCGGTGGCGCAACTGCAACCCGGGCTGTTCCAGGGCTCCGAACTGTTATCCATGGCCGACGCCGACTGG 
AGCGCCCCCGGCGCCCTGGCGGCGGCCAAGCGCCTGATGCGCCAGGCGCTCGCTCCCCATCTGGGCGGCCGG 
CCGCTGGTCAGCCGCGAGCTGTTCATGAACCGTAAGGAGTCACCCCGTGACTGA