ViewGene

Locus Name:
GeneID:
Location:

GeneID: 3425

TrivialName: PA14_00900

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_00900

PAO1 Ortholog Locus: PA0076

Sequence Length: 681

Protein Length: 226

Start: 89169

Stop: 88489

Strand: -

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG03466.1|AE004446_14 (AE004446) hypothetical protein [Pseudomonas aeruginosa PAO1] Identities = 225/226 (99%), Positives = 225/226 (99%)

Sequence:

TTGAACAGCGTCGGTTTCTACGGCAAGCTGGCCGGCCGCGGCGATTTCGTCAGCCGCGGCCTGCCGAACACC
TTCGTCGAACCCTGGGACGCCTGGCTGGCCAGCGGCATGCGCGCCAGCCAGGACGAACTCGGCGCGGCCTGG
CTCGACGCCTACCTGACCAGCCCGCTGTGGCGCTTCGCCATCGCCCCCGGCCTGCTCGGCGGCGAAGCGGTG
GCCGGGGTGGTGATGCCGAGCATCGACCGGGTCGGTCGCTATTTCCCGCTGACCGTCGCCTGCCTGCTGCCG
GCGAACGCCGACCTCGGCGGGCTGGTCGGCGGCGACGACGGCTGGTTCGAGCAGGTCGAGAGCCTGCTGCTC
TCCACCCTCGAACCGGAGGCCGAGGTCGAGGCCTTCGAGCAGGCGGTGGCGCAGCTCCCGGCCCCTCCCTGC
GGACCGCGCATCGAACAATCGCTGATCAGCGGCAACCTGCTGCGCAGCGAAGCGGTGACCCCGGCGCAGCGC
CTCGCCGCGCTGGCCCAGCATGCCTGCGACGGCGCCAGCCACTGGTGGGGACGCGGCTCGGCACGGATCTCC
GCCGGCCTGATGCGCTACCAGGGCCTGCCGCCGGCGCCGGCGTTCGGACGATTCCTCACCGGAGAGGGCGAG
GTGATCCCGCTCTTTCCCGGCATACCCGGTTAA

Translation:

MNSVGFYGKLAGRGDFVSRGLPNTFVEPWDAWLASGMRASQDELGAAWLDAYLTSPLWRFAIAPGLLGGEAV
AGVVMPSIDRVGRYFPLTVACLLPANADLGGLVGGDDGWFEQVESLLLSTLEPEAEVEAFEQAVAQLPAPPC
GPRIEQSLISGNLLRSEAVTPAQRLAALAQHACDGASHWWGRGSARISAGLMRYQGLPPAPAFGRFLTGEGE
VIPLFPGIPG*

AnnotationID:3433 GeneID:3425

AnnotatorUID: diggins

Modification Date/Time: 2005-03-22 17:05:35

Gene Name:

Confidence Code: 4

GeneProduct: conserved hypothetical protein

Cell Localization: ()

Synonyms: PA0076

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

Genomic Context:

Comment:

ReferenceID:14837

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:23995

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:33419

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 3425_cdd.html

URL:

Homologs By Global Alignment

Gene ID:3425

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

5477 PA0076_tr translation of PA0076 226 99.55 99.55 0 1190.0

153103 gb|AAG03466.1|AE004446_14 (AE004446) hypothetical protein PA0076 [Pseudomonas aeruginosa PAO1] 226 99.11 99.55 0 1188.0

153104 gb|AAL17785.1|AF361470_5 (AF361470) ImpM [Rhizobium leguminosarum bv. trifolii] 499 14.42 20.64 315 275.0

GC ORFID: `46427`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA0076`	Glimmer Score:
Start: `5890507`	Stop: `5889827`
Length: `681`
Start Codon: `TTG`	Truncated Start:
Stop Codon: `TAA`	Truncated Stop:
Homolog: `t_PA0076 translation of PA0076`	Homolog Bit Score `462.0`
Other Homologs: `t_PA0076 (ORF: GLIMMER)`
GC ORF Sequence
TTGAACAGCGTCGGTTTCTACGGCAAGCTGGCCGGCCGCGGCGATTTCGTCAGCCGCGGCCTGCCGAACACC TTCGTCGAACCCTGGGACGCCTGGCTGGCCAGCGGCATGCGCGCCAGCCAGGACGAACTCGGCGCGGCCTGG CTCGACGCCTACCTGACCAGCCCGCTGTGGCGCTTCGCCATCGCCCCCGGCCTGCTCGGCGGCGAAGCGGTG GCCGGGGTGGTGATGCCGAGCATCGACCGGGTCGGTCGCTATTTCCCGCTGACCGTCGCCTGCCTGCTGCCG GCGAACGCCGACCTCGGCGGGCTGGTCGGCGGCGACGACGGCTGGTTCGAGCAGGTCGAGAGCCTGCTGCTC TCCACCCTCGAACCGGAGGCCGAGGTCGAGGCCTTCGAGCAGGCGGTGGCGCAGCTCCCGGCCCCTCCCTGC GGACCGCGCATCGAACAATCGCTGATCAGCGGCAACCTGCTGCGCAGCGAAGCGGTGACCCCGGCGCAGCGC CTCGCCGCGCTGGCCCAGCATGCCTGCGACGGCGCCAGCCACTGGTGGGGACGCGGCTCGGCACGGATCTCC GCCGGCCTGATGCGCTACCAGGGCCTGCCGCCGGCGCCGGCGTTCGGACGATTCCTCACCGGAGAGGGCGAG GTGATCCCGCTCTTTCCCGGCATACCCGGTTAA