ViewGene
Locus Name:
GeneID:
Location:

GeneID:3424
TrivialName: PA14_61890
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_61890
PAO1 Ortholog Locus:PA4679
Sequence Length:702
Protein Length:233
Start: 5520714
Stop: 5520013
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08066.1|AE004881_9 (AE004881) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 232/233 (99%), Positives = 232/233 (99%)
Sequence:
GTGCCTGTGCGTGCGCGCGCCGCGATCGATGCGCCGCAGGCCCGCGTCCCGCAAGCCGAGGCGCCGGCCAGC
GCACCGAGCGTGGCTCCCGCCGCGCCCGTGGAAGGCCGGGGGATCCCGATCAGCCTGCCGAAGCCGGGCGCC
CCGGCGGCGAAGAAAGCCGAGCCGGTCGCGCCGGTCGAAGAGGCCCCGGCCGAGCCGCCGGCGGTCCAGGCC
CCGCCGCCGCGCTTCGCCTTGCAACTGCTGCAGGCGGGCTCCTGCACCCTGCTGGTCGAACTGCCCACCGGC
GAACCCTTCGCCAGCCGCGATCCGGGTTACCTGCTGCTGCGCGACCTGCTGCGCGCCGCCGGCCTGCCGGAC
AGCCCGCGGCTGATCGGCGAACCGGTACGCTGGCCGCTGCTGGCGCGCGGCAACCTCGACCAGGGGCCGCAG
GCGGCCCTGGAGTTCGTCCAGAGCTTCGTCGCCGCGCGCATGGAGGAGAGCGAGCGTAGCCGCTGCCTGTGG
TTGGTCGGCCTGCCGGCGATCCGCTTCGCCGGCGAGGGCGACGAGGGCAGCCTGTTCCGCGAACTGCAGGTG
GACGGTCTGGGCGCAACCTGGGCCGTGCCAGGCCTGGAAGCCCTCATGGAAGAACCCGCCCTCAAGGGCGAG
CTGTGGCGCGCCATGCGCCGTGTCCGTCAGCGCTGGTCGAGCGAGATTCAATGA
Translation:
MPVRARAAIDAPQARVPQAEAPASAPSVAPAAPVEGRGIPISLPKPGAPAAKKAEPVAPVEEAPAEPPAVQA
PPPRFALQLLQAGSCTLLVELPTGEPFASRDPGYLLLRDLLRAAGLPDSPRLIGEPVRWPLLARGNLDQGPQ
AALEFVQSFVAARMEESERSRCLWLVGLPAIRFAGEGDEGSLFRELQVDGLGATWAVPGLEALMEEPALKGE
LWRAMRRVRQRWSSEIQ*
AnnotationID:3432GeneID:3424
AnnotatorUID: diggins
Modification Date/Time: 2005-03-08 08:08:15
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:14835




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23993




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3424
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5476
                           PA4679_tr
                           translation of PA4679
                           233
                           99.57
                           99.57
                           0
                           1189.0
     

     
     
153100
                           gb|AAG08066.1|AE004881_9
                           (AE004881) hypothetical protein PA4679 [Pseudomonas aeruginosa PAO1]
                           233
                           99.14
                           99.57
                           0
                           1186.0
     

     
     
153101
                           gb|AAO54525.1|
                           (AE016859) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           276
                           49.63
                           60.86
                           52
                           669.0
     

     
     
153102
                           gb|AAN66321.1|AE016260_7
                           (AE016776) conserved hypothetical protein [Pseudomonas putida KT2440]
                           294
                           44.21
                           57.14
                           64
                           642.0
     

     






      

          
GC ORFID: 46426How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4679Glimmer Score: 

          
Start: 4784394Stop: 4783693

          
Length: 702


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4679 translation of PA4679Homolog Bit Score 462.0

          
Other Homologs:  psyr_15may02_Scaffold3_revised_gene4236 (ORF: BLASTX 300.0), t_PA4679 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGCCTGTGCGTGCGCGCGCCGCGATCGATGCGCCGCAGGCCCGCGTCCCGCAAGCCGAGGCGCCGGCCAGC 
GCACCGAGCGTGGCTCCCGCCGCGCCCGTGGAAGGCCGGGGGATCCCGATCAGCCTGCCGAAGCCGGGCGCC 
CCGGCGGCGAAGAAAGCCGAGCCGGTCGCGCCGGTCGAAGAGGCCCCGGCCGAGCCGCCGGCGGTCCAGGCC 
CCGCCGCCGCGCTTCGCCTTGCAACTGCTGCAGGCGGGCTCCTGCACCCTGCTGGTCGAACTGCCCACCGGC 
GAACCCTTCGCCAGCCGCGATCCGGGTTACCTGCTGCTGCGCGACCTGCTGCGCGCCGCCGGCCTGCCGGAC 
AGCCCGCGGCTGATCGGCGAACCGGTACGCTGGCCGCTGCTGGCGCGCGGCAACCTCGACCAGGGGCCGCAG 
GCGGCCCTGGAGTTCGTCCAGAGCTTCGTCGCCGCGCGCATGGAGGAGAGCGAGCGTAGCCGCTGCCTGTGG 
TTGGTCGGCCTGCCGGCGATCCGCTTCGCCGGCGAGGGCGACGAGGGCAGCCTGTTCCGCGAACTGCAGGTG 
GACGGTCTGGGCGCAACCTGGGCCGTGCCAGGCCTGGAAGCCCTCATGGAAGAACCCGCCCTCAAGGGCGAG 
CTGTGGCGCGCCATGCGCCGTGTCCGTCAGCGCTGGTCGAGCGAGATTCAATGA