ViewGene
Locus Name:
GeneID:
Location:

GeneID:3423
TrivialName: PA14_55710
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_55710
PAO1 Ortholog Locus:PA4286
Sequence Length:684
Protein Length:227
Start: 4972880
Stop: 4972197
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07674.1|AE004844_6 (AE004844) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 227/227 (100%), Positives = 227/227 (100%)
Sequence:
GTGGTCGAAGTGTTTTCCGTGCAGGATGGGCTGGACGCCGAGCGCGCCCTGCTCGACGAGGTGTGTGGCGGT
GCCCGCGAGCATGGCCTGTTGCTCTGGCAGCCGTGCGATCGGGCGCTGGTCATGCCGCGCCGGATGGAGCGC
CTGGAAGGGTTCGCGCCGGCCAGCGCAGCGGTCGCCGAACGCGGCTGGCCGGTGCTGCTGCGCGATACCGGC
GGCGAGCCGGTGCCGCAATCGCCGGGCGTGCTGAACATCGCCCTGTCCTATGCGCTGGGGCCCGGCGACAAC
GAGCAGACCCGTATCGAAACCGCCTACCTGCGGCTGTGCCAGCCGATCTGCGACTGGCTCCGCGAGCGCGGC
CTGGACGCCGGCGTGGGCGCCGTGGCCGGTTCCTTCTGCGACGGCCGCTACAATGTCACCCTGGATGGGCGC
AAGCTCGCCGGGACCGCACAACGCTGGCGGCGCAACGGCGCCGGCCGGCCGGTGGTGCTGGCGCACGCGGCG
CTGCTGGTCGGCGCCGAGCGCGAGGAGATGGTCGAGGTGGTCAACACCTTCACCCGCCGTTGCGCCAGTGCC
CCGGATTGCCAGGCGGACAGCCATCTCGGCCTGAGCGAGCGCTGGAGCGATTTCCGCATGGCCGACAGCCTC
GAACTGGAACGACGCTTCGTCGCCGCCCGATCCTGA
Translation:
MVEVFSVQDGLDAERALLDEVCGGAREHGLLLWQPCDRALVMPRRMERLEGFAPASAAVAERGWPVLLRDTG
GEPVPQSPGVLNIALSYALGPGDNEQTRIETAYLRLCQPICDWLRERGLDAGVGAVAGSFCDGRYNVTLDGR
KLAGTAQRWRRNGAGRPVVLAHAALLVGAEREEMVEVVNTFTRRCASAPDCQADSHLGLSERWSDFRMADSL
ELERRFVAARS*
AnnotationID:3431GeneID:3423
AnnotatorUID: diggins
Modification Date/Time: 2005-04-03 19:07:49
Gene Name:
Confidence Code:3
GeneProduct:putative lipoate-protein ligase
Cell Localization:()
Synonyms:PA4286
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(4) Biosynthesis of cofactors, prosthetic groups and carriers
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0095
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG0095, LplA, Lipoate-protein ligase A [Coenzyme metabolism]
CD-Length = 248 residues,  81.9% aligned
Score =  128 bits (323), Expect = 5e-31







   
Genomic Context:






   
Comment:


















    ReferenceID:14833




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23991




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36649




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3423_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3423
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5475
                           PA4286_tr
                           translation of PA4286
                           227
                           99.99
                           99.99
                           0
                           1189.0
     

     
     
153097
                           gb|AAG07674.1|AE004844_6
                           (AE004844) hypothetical protein PA4286 [Pseudomonas aeruginosa PAO1]
                           227
                           99.55
                           99.99
                           0
                           1186.0
     

     
     
153098
                           gb|AAO54137.1|
                           (AE016858) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           233
                           54.93
                           67.38
                           8
                           620.0
     

     
     
153099
                           gb|AAN66053.1|AE016234_6
                           (AE016775) conserved hypothetical protein [Pseudomonas putida KT2440]
                           241
                           50.20
                           60.16
                           21
                           565.0
     

     






      

          
GC ORFID: 46425How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4286Glimmer Score: 

          
Start: 4236556Stop: 4235873

          
Length: 684


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4286 translation of PA4286Homolog Bit Score 462.0

          
Other Homologs:  psyr_15may02_Scaffold14_revised_gene2360 (ORF: BLASTX 241.0), t_PA4286 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGGTCGAAGTGTTTTCCGTGCAGGATGGGCTGGACGCCGAGCGCGCCCTGCTCGACGAGGTGTGTGGCGGT 
GCCCGCGAGCATGGCCTGTTGCTCTGGCAGCCGTGCGATCGGGCGCTGGTCATGCCGCGCCGGATGGAGCGC 
CTGGAAGGGTTCGCGCCGGCCAGCGCAGCGGTCGCCGAACGCGGCTGGCCGGTGCTGCTGCGCGATACCGGC 
GGCGAGCCGGTGCCGCAATCGCCGGGCGTGCTGAACATCGCCCTGTCCTATGCGCTGGGGCCCGGCGACAAC 
GAGCAGACCCGTATCGAAACCGCCTACCTGCGGCTGTGCCAGCCGATCTGCGACTGGCTCCGCGAGCGCGGC 
CTGGACGCCGGCGTGGGCGCCGTGGCCGGTTCCTTCTGCGACGGCCGCTACAATGTCACCCTGGATGGGCGC 
AAGCTCGCCGGGACCGCACAACGCTGGCGGCGCAACGGCGCCGGCCGGCCGGTGGTGCTGGCGCACGCGGCG 
CTGCTGGTCGGCGCCGAGCGCGAGGAGATGGTCGAGGTGGTCAACACCTTCACCCGCCGTTGCGCCAGTGCC 
CCGGATTGCCAGGCGGACAGCCATCTCGGCCTGAGCGAGCGCTGGAGCGATTTCCGCATGGCCGACAGCCTC 
GAACTGGAACGACGCTTCGTCGCCGCCCGATCCTGA