ViewGene
Locus Name:
GeneID:
Location:

GeneID:3422
TrivialName: PA14_23190
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_23190
PAO1 Ortholog Locus:PA3174
Sequence Length:729
Protein Length:242
Start: 2009507
Stop: 2008779
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06562.1|AE004741_7 (AE004741) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 239/242 (98%), Positives = 239/242 (98%)
Sequence:
ATGTCGAAGCATTCCCCCACCGATCGCCTGCTGCAGATCCTCATTGCCCTTGGCCAGGCGCCCGAAGCCCTG
TCTGCCAAGGAGCTGTCGCTGACCCTGGAGCAGCCGCTGAGCAGCACCTACCGGCACCTGAAGACCCTGTTG
CGCTGGGGCCTGGCCGAAGAACAGGCCGGCCAGGGCCGCTACCTGCCCGGCCCGGCCTGCCTGCAACTGGCG
AAGAAATTCGATCGCGAGGCCTCGCTGATCGGTCTCGCCAAACCGGAACTCAAGCGCCTGGCCGACCTGAGC
CAGGAGAGCGTGGCGCTGATGGTGGCCAGCAACCAGCAGGCGATCTGCCTGGAACTGTTCGACAGTCCGCAG
CCGCTGCGCTGCTGCTACCAGAAAGGGCTGGCGCAGCCGCTGTTGCATGGCGCCTCGGCCAAAGCCCTGCTG
GCGCACCTGGAGGACGAACGGCGCGAGGAGCTGTACCTCGCCCAGGAATTCTCCGCCGAGCGTATCGACAAG
CTGGAGCAGGAACTCCGGCTGATCCGCGAACAGGGCTACGCCGTCAGCCAGGGCGAGATCGACGAAGGCGTC
TGGGGCATCAGCGTACCGCTGCTGGACAGCCGCCAGCGCCTGCACGGCGCCCTCAGCCTGATGGCCCCCGCC
TTGCGCGCCCAGTCGCGCAGCGAACGCTTGCGGCAATGGACCCTCGACGCCGCCGCGCGACTTTCCGCGCGG
CTGGACTGA
Translation:
MSKHSPTDRLLQILIALGQAPEALSAKELSLTLEQPLSSTYRHLKTLLRWGLAEEQAGQGRYLPGPACLQLA
KKFDREASLIGLAKPELKRLADLSQESVALMVASNQQAICLELFDSPQPLRCCYQKGLAQPLLHGASAKALL
AHLEDERREELYLAQEFSAERIDKLEQELRLIREQGYAVSQGEIDEGVWGISVPLLDSRQRLHGALSLMAPA
LRAQSRSERLRQWTLDAAARLSARLD*
AnnotationID:3430GeneID:3422
AnnotatorUID: diggins
Modification Date/Time: 2005-04-13 13:01:50
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1414
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAE33134.1| (BX640445) probable transcriptional regulator [Bordetella
           bronchiseptica]
          Length = 245

 Score =  167 bits (422), Expect = 6e-41
 Identities = 97/236 (41%), Positives = 138/236 (58%), Gaps = 6/236 (2%)






 
Structural Features:
COG1414, IclR, Transcriptional regulator [Transcription]
CD-Length = 246 residues,  99.6% aligned
Score =  169 bits (429), Expect = 4e-43
Identities = 86/245 (35%), Positives = 122/245 (49%), Gaps = 7/245 (2%)






   
Genomic Context:






   
Comment:


















    ReferenceID:6847




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23989




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:38097




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3422_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3422
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5474
                           PA3174_tr
                           translation of PA3174
                           242
                           98.76
                           98.76
                           0
                           1188.0
     

     
     
153090
                           gb|AAG06562.1|AE004741_7
                           (AE004741) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           242
                           98.76
                           98.76
                           0
                           1188.0
     

     
     
153091
                           emb|CAE33134.1|
                           (BX640445) probable transcriptional regulator [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50]
                           250
                           39.20
                           56.40
                           13
                           424.0
     

     
     
153092
                           emb|CAE36865.1|
                           (BX640427) probable transcriptional regulator [Bordetella parapertussis]
                           250
                           39.20
                           56.40
                           13
                           424.0
     

     
     
153093
                           emb|CAE42137.1|
                           (BX640416) probable transcriptional regulator [Bordetella pertussis] [Bordetella pertussis Tohama I]
                           251
                           39.04
                           56.17
                           14
                           415.0
     

     






      

          
GC ORFID: 46424How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3174Glimmer Score: 

          
Start: 2944424Stop: 2945152

          
Length: 729


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3174 translation of PA3174Homolog Bit Score 462.0

          
Other Homologs:  t_PA3174 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCGAAGCATTCCCCCACCGATCGCCTGCTGCAGATCCTCATTGCCCTTGGCCAGGCGCCCGAAGCCCTG 
TCTGCCAAGGAGCTGTCGCTGACCCTGGAGCAGCCGCTGAGCAGCACCTACCGGCACCTGAAGACCCTGTTG 
CGCTGGGGCCTGGCCGAAGAACAGGCCGGCCAGGGCCGCTACCTGCCCGGCCCGGCCTGCCTGCAACTGGCG 
AAGAAATTCGATCGCGAGGCCTCGCTGATCGGTCTCGCCAAACCGGAACTCAAGCGCCTGGCCGACCTGAGC 
CAGGAGAGCGTGGCGCTGATGGTGGCCAGCAACCAGCAGGCGATCTGCCTGGAACTGTTCGACAGTCCGCAG 
CCGCTGCGCTGCTGCTACCAGAAAGGGCTGGCGCAGCCGCTGTTGCATGGCGCCTCGGCCAAAGCCCTGCTG 
GCGCACCTGGAGGACGAACGGCGCGAGGAGCTGTACCTCGCCCAGGAATTCTCCGCCGAGCGTATCGACAAG 
CTGGAGCAGGAACTCCGGCTGATCCGCGAACAGGGCTACGCCGTCAGCCAGGGCGAGATCGACGAAGGCGTC 
TGGGGCATCAGCGTACCGCTGCTGGACAGCCGCCAGCGCCTGCACGGCGCCCTCAGCCTGATGGCCCCCGCC 
TTGCGCGCCCAGTCGCGCAGCGAACGCTTGCGGCAATGGACCCTCGACGCCGCCGCGCGACTTTCCGCGCGG 
CTGGACTGA