ViewGene
Locus Name:
GeneID:
Location:

GeneID:3421
TrivialName: PA14_45470
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_45470
PAO1 Ortholog Locus:PA1466
Sequence Length:687
Protein Length:228
Start: 4048496
Stop: 4049182
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04855.1|AE004576_4 (AE004576) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 225/228 (98%), Positives = 226/228 (99%)
Sequence:
ATGGAACCTGTACTGTTTTATGGCGTACCCCACGGCTGTTCCTTCGGCTCGATCGTGGCCCTCGAGTGGCTC
GGCCGCCCCTATCGCCTGTGTCGGATCGAGATGCCGCTGGAGACCGGCGAGCGCACCTACGTGCGCCTGAAC
CCGGCTCGCCAGACGCCTACCCTGCTCCTGGAGGACGGCCGCGCACTCAGCGAAAGCCTGGCCATTCTCCAG
CACCTGGCGGCGCGCGACCTGTGCAGGAAGCTCGGCTATCCGCAGGGCAGCGCCGAGTTCGACGAACTGAAC
TTCGCCCTCGCCCTCCTGCATACCGAATGCCATTCGGCCTGGGGGACCCTGTTCTATCTGGAGGACGCCGAC
GCAACCACGACGGCAAGGGCGCTGGCGCGCGCGGCGCGAGCCTATGGCCGGATCGACAAGCTGCTCGGCGAC
CGCAAGTGGCTGGCCGGCGAAGGGCCGAGCGTGGCCGACGCCTACCTCGCGGGTACCGCTCGTTGGGGACGG
GAGCTGGGCTACTTCGACCTGCAACACGACTTTCCGCGCCTACATCGACACCTGGAGAAGCTGGAGCAGGAC
CCGGCGGTGCGCTTCGCCCATGCCATCGAGGATCGCCTGCCGGCGCAGAGCTGCGGGGAGTTCAGGGGAGAG
GTGACACTGGCAGAAGTGGCGAGCCGCCTGCTCGCCTGA
Translation:
MEPVLFYGVPHGCSFGSIVALEWLGRPYRLCRIEMPLETGERTYVRLNPARQTPTLLLEDGRALSESLAILQ
HLAARDLCRKLGYPQGSAEFDELNFALALLHTECHSAWGTLFYLEDADATTTARALARAARAYGRIDKLLGD
RKWLAGEGPSVADAYLAGTARWGRELGYFDLQHDFPRLHRHLEKLEQDPAVRFAHAIEDRLPAQSCGEFRGE
VTLAEVASRLLA*
AnnotationID:3429GeneID:3421
AnnotatorUID: diggins
Modification Date/Time: 2005-05-27 10:10:20
Gene Name:
Confidence Code:3
GeneProduct:putative glutathione S-transferase
Cell Localization:(1) Cytoplasmic
Synonyms:PA1466
Cell Localization Confidence Code:3
MolecularFunction:
Functional Category:(8) Central intermediary metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0625
Secondary Functional Category(ies):posttranslational modification, protein turnover, chaperones
EC Number:2.5.1.18
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG0625, Gst, Glutathione S-transferase 
[Posttranslational modification, protein turnover, chaperones] 
CD-Length = 211 residues,  97.2% aligned
Score = 87.6 bits (216), Expect = 1e-18
Identities = 49/207 (23%), Positives = 76/207 (36%), Gaps = 11/207 (5%)






   
Genomic Context:






   
Comment:


















    ReferenceID:6845




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23987




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37375




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3421_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3421
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5473
                           PA1466_tr
                           translation of PA1466
                           228
                           98.68
                           99.12
                           0
                           1188.0
     

     
     
153089
                           gb|AAG04855.1|AE004576_4
                           (AE004576) hypothetical protein PA1466 [Pseudomonas aeruginosa PAO1]
                           228
                           98.68
                           99.12
                           0
                           1188.0
     

     






      

          
GC ORFID: 46423How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1466Glimmer Score: 

          
Start: 905413Stop: 904727

          
Length: 687


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1466 translation of PA1466Homolog Bit Score 462.0

          
Other Homologs:  t_PA1466 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGAACCTGTACTGTTTTATGGCGTACCCCACGGCTGTTCCTTCGGCTCGATCGTGGCCCTCGAGTGGCTC 
GGCCGCCCCTATCGCCTGTGTCGGATCGAGATGCCGCTGGAGACCGGCGAGCGCACCTACGTGCGCCTGAAC 
CCGGCTCGCCAGACGCCTACCCTGCTCCTGGAGGACGGCCGCGCACTCAGCGAAAGCCTGGCCATTCTCCAG 
CACCTGGCGGCGCGCGACCTGTGCAGGAAGCTCGGCTATCCGCAGGGCAGCGCCGAGTTCGACGAACTGAAC 
TTCGCCCTCGCCCTCCTGCATACCGAATGCCATTCGGCCTGGGGGACCCTGTTCTATCTGGAGGACGCCGAC 
GCAACCACGACGGCAAGGGCGCTGGCGCGCGCGGCGCGAGCCTATGGCCGGATCGACAAGCTGCTCGGCGAC 
CGCAAGTGGCTGGCCGGCGAAGGGCCGAGCGTGGCCGACGCCTACCTCGCGGGTACCGCTCGTTGGGGACGG 
GAGCTGGGCTACTTCGACCTGCAACACGACTTTCCGCGCCTACATCGACACCTGGAGAAGCTGGAGCAGGAC 
CCGGCGGTGCGCTTCGCCCATGCCATCGAGGATCGCCTGCCGGCGCAGAGCTGCGGGGAGTTCAGGGGAGAG 
GTGACACTGGCAGAAGTGGCGAGCCGCCTGCTCGCCTGA