ViewGene
Locus Name:
GeneID:
Location:

GeneID:3420
TrivialName: PA14_59480
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_59480
PAO1 Ortholog Locus:
Sequence Length:636
Protein Length:211
Start: 5293173
Stop: 5293808
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAP84194.1| (AY273869) conserved hypothetical protein [Pseudomonas aeruginosa]
Identities = 211/211 (100%), Positives = 211/211 (100%)
Sequence:
ATGATCACAGTTCCCGGACAGTTGGCCATTCGAACCATCAACGGTCGCTATGGCGAGTTCAATGTGGGAAAA
CTCTGGACTTCGATCGGGGAGTTCATCATCAAGGATGCCTTCCTGGATCAACACACCGAAGGCAAGTACCGC
GGTGATTTCGTCATCGCCAATATCCGCCCCCACCACTACTCCGCCGGCGGTCGGCTAGTCATCGAGATCCGC
GCCATAGTGGACAGCATGACGCTGAACGATATGGACAGCCTCAGCGACGAGGAGGTAGAGCGTCTTTCCGGC
AATGAGGTGGATCCGCTCGACGAAGTGCCCGAGATCCAGCTCCCCACAGTAGTACCGGCGATACCACCAAAG
TCGCCGTCACCCCAGAAGTCGAAGCCTCTGTGCCTCGCTGCAACCAGGGACGCGCCTTTCGGTATGGACACT
CCGGCTCCTGCAGAGCAGGCCGCCTCTCTGGACACAGACGCGGATGCAGAACTGTTCGGGACGGTCTGGCCG
CTAGGCGAAATCGTCAAGCTGGACACCACGGTCGACCGCAAGCGACTACGCCAACAGTGCGTGCGACTCGGC
GCGCTGGGCTATGAGCTCGACTTCAAACAACAGGTGTGGACCCGCAAGGAGGCCGCATGA
Translation:
MITVPGQLAIRTINGRYGEFNVGKLWTSIGEFIIKDAFLDQHTEGKYRGDFVIANIRPHHYSAGGRLVIEIR
AIVDSMTLNDMDSLSDEEVERLSGNEVDPLDEVPEIQLPTVVPAIPPKSPSPQKSKPLCLAATRDAPFGMDT
PAPAEQAASLDTDADAELFGTVWPLGEIVKLDTTVDRKRLRQQCVRLGALGYELDFKQQVWTRKEAA*
AnnotationID:3428GeneID:3420
AnnotatorUID: diggins
Modification Date/Time: 2006-01-29 09:09:51
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:6843




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23985




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3420
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
153083
                           gb|AAP84194.1|
                           (AY273869) conserved hypothetical protein [Pseudomonas aeruginosa]
                           229
                           92.13
                           92.13
                           18
                           1096.0
     

     
     
153085
                           gb|AAF84569.1|AE003998_11
                           (AE003998) hypothetical protein [Xylella fastidiosa 9a5c]
                           232
                           48.27
                           57.32
                           33
                           509.0
     

     
     
153084
                           emb|CAE92935.1|
                           (AJ617740) hypothetical protein [Pseudomonas putida]
                           230
                           47.82
                           57.39
                           20
                           511.0
     

     
     
153087
                           gb|AAN62306.1|AF440524_93
                           (AF440524) conserved hypothetical protein [Pseudomonas aeruginosa]
                           227
                           47.13
                           59.47
                           20
                           479.0
     

     
     
153086
                           gb|AAN62173.1|AF440523_80
                           (AF440523) conserved hypothetical protein [Pseudomonas aeruginosa]
                           230
                           46.52
                           57.39
                           20
                           503.0
     

     






      

          
GC ORFID: 46422How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_RL069Glimmer Score: 

          
Start: 4556852Stop: 4557487

          
Length: 636


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_RL069 229 Homolog: XF1760 / Hypothetical protein / X.fastidiosa / 9a5c (AAF84569) translation of RL069Homolog Bit Score 463.0

          
Other Homologs:  psyr_15may02_Scaffold10_revised_gene1623 (ORF: BLASTX 241.0), t_RL069 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGATCACAGTTCCCGGACAGTTGGCCATTCGAACCATCAACGGTCGCTATGGCGAGTTCAATGTGGGAAAA 
CTCTGGACTTCGATCGGGGAGTTCATCATCAAGGATGCCTTCCTGGATCAACACACCGAAGGCAAGTACCGC 
GGTGATTTCGTCATCGCCAATATCCGCCCCCACCACTACTCCGCCGGCGGTCGGCTAGTCATCGAGATCCGC 
GCCATAGTGGACAGCATGACGCTGAACGATATGGACAGCCTCAGCGACGAGGAGGTAGAGCGTCTTTCCGGC 
AATGAGGTGGATCCGCTCGACGAAGTGCCCGAGATCCAGCTCCCCACAGTAGTACCGGCGATACCACCAAAG 
TCGCCGTCACCCCAGAAGTCGAAGCCTCTGTGCCTCGCTGCAACCAGGGACGCGCCTTTCGGTATGGACACT 
CCGGCTCCTGCAGAGCAGGCCGCCTCTCTGGACACAGACGCGGATGCAGAACTGTTCGGGACGGTCTGGCCG 
CTAGGCGAAATCGTCAAGCTGGACACCACGGTCGACCGCAAGCGACTACGCCAACAGTGCGTGCGACTCGGC 
GCGCTGGGCTATGAGCTCGACTTCAAACAACAGGTGTGGACCCGCAAGGAGGCCGCATGA