ViewGene
Locus Name:
GeneID:
Location:

GeneID:342
TrivialName: PA14_42220
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_42220
PAO1 Ortholog Locus:PA1727
Sequence Length:2058
Protein Length:685
Start: 3764042
Stop: 3766099
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05116.1|AE004599_1 (AE004599) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 680/685 (99%), Positives = 683/685 (99%)
Sequence:
ATGCTTATCAGCAGCTACAACCAGGTTCTTGTCGCCTTTTCCCTGATTGTGGCCATCCTGGCGTCCTACACC
GCTCTCGACATGGCCGGCCGGGTGACCCTGGCGAAAGGCCGCGAGGCGCTCTCCTGGCTGATCGGCGGCGCT
TTCGCCATGGGCTTCGGCATCTGGTCGATGCATTTCGTCGGCATGCTCGCCTTCAGCCTGCCGATCCCGCTC
GGCTACGACCTGGGCCTGACCCTGCTGTCGCTGCTGCTGGCCGTCGGCAGTTCGGCCTTCGCCCTCTGGCTG
GTGTGCCAGGCGGAACTCCCCTGGCAACGCCTGGCGCTGGGCGCCCTGCTGATAGGCAGCGGCATCGCCGCC
ATGCACTACACCGGGATGGCCGCCCTGCTGATGATGCCGGGGATCGTCTACGACCCGCTGTGGCTCGGCCTC
TCCATCCTGATCGCGGTGATCGCCTCCGGCGCCGCGCTGTGGATCGCCTTCCGCCTGCGCCATGGCAGCCGG
CGCATCGTCCTGGTCCGGGCCGGCGCCGCCCTGGTGATGGGCTGCGCCATCGTCGGCATGCACTACACCGGG
ATGGCCGCCGCGCAGTTCCCCCTGGGCAGCTTCTGCGGCGCCGCCGGCCGAGGCATCGACAACGGCTGGCTG
GCGGTGCTGGTCATCGTGATCACCCTGGCGGTGATCGCCATCGCCCTGATCGTCTCGGTGCTGGACTCGCGC
CTGGAGGCGCGTACCTCGGTGCTCGCCACCTCCCTCGCACGAGCCAACCGCGAGCTGATCCAGTTGGCCCTG
CACGACAACCTGACCAAGCTGCCCAACCGCATGCTCCTCGACGACCGCCTGGAGCAGGCGATCCAGCAGGCG
ATCCGCGACGATCGCCGGTTCGCCGTGCTGTTCATGGACCTGGACGGCTTCAAGGCGGTCAACGATGCCTAC
GGCCATCACCTCGGCGACCTGTTGCTGATCGAAGTCGCCGAGCGTATCCGCGCCAACGTCCGCGCCCAGGAC
ACCATCGCCCGCCTCGGCGGCGACGAGTTCGTCCTGCTGATCGAGGCCCGCGAGCCCGCCGACGCCGCGACC
CTGGCCGAGAAGCTGGTGAAGCGGATCAGCCAGCCGTACCAGATATCCCGCCACGAGGTGCGGATCTCGGCG
AGCATCGGCATCGCGCTCTACCCCGGCGACGGGCAGACCCGCCACGAACTGATGATCAATGCCGACGCGGCG
ATGTATCACGCCAAGGACCAGGGACGGAACGGCTACTGCTTCTTCGAGAGTTCGATGAACGCCAACGCCCAG
GAACAGTTGCAACTGCTCCATGACCTGCGCCAGGCCCTGGAGCGCCGGCAGTTGGTCTTGCACTACCAACCC
AAGGTACTGGCGCCGAACGGACCGATGGTCGGCGTGGAAGCGCTGCTGCGCTGGGAGCATCCGCAACACGGA
CTGATCCCCCCCGACCAGTTCCTGCCGCTGGCGGAAAAAACCGGCCTGATCGTGCAGATCGGCGAGTGGGTG
CTCGACGAAGCCTGCCGGCAGATGCGCCTCTGGCTGGACGGCGGGCATGCGGAGTGGAACATCGCGGTGAAC
CTTTCGGCCCTGCAGTTCGCCCATGCCGGCCTGGTCGACTCGGTGCGCAACGCACTCCTGCGCCACAGCCTG
GAGCCCAGCCACCTGATCCTCGAGGTGACCGAATCGACCGCCATGCGCGATGCCGATGCCAGCCTGGTGATC
CTCGAGCAGTTGTCGGCGATGGGCGTCGGCATCTCCATCGACGACTTCGGCACCGGCTACTCCAGCCTGCTC
TATCTCAAGCGCCTGCCGGCGAGCGAACTGAAGATCGACCGTGGCTTCATCAACGAGCTGGCCCACGACAGC
GACGACGCCGCGATCGTCTCGGCGATCGTCGCCCTCGGCCGCACGCTGAACCTGAAGATCGTCGCCGAGGGC
GTGGAAACCGAGGCCCAGCAGGAGTTCCTGACCCGCCTCGGCTGCAATTCGCTGCAAGGCTTCCTGCTCGGC
AGGCCGATGCCGGCCGAGCAGTTGCTCGCCAGCGTCGCCTGA
Translation:
MLISSYNQVLVAFSLIVAILASYTALDMAGRVTLAKGREALSWLIGGAFAMGFGIWSMHFVGMLAFSLPIPL
GYDLGLTLLSLLLAVGSSAFALWLVCQAELPWQRLALGALLIGSGIAAMHYTGMAALLMMPGIVYDPLWLGL
SILIAVIASGAALWIAFRLRHGSRRIVLVRAGAALVMGCAIVGMHYTGMAAAQFPLGSFCGAAGRGIDNGWL
AVLVIVITLAVIAIALIVSVLDSRLEARTSVLATSLARANRELIQLALHDNLTKLPNRMLLDDRLEQAIQQA
IRDDRRFAVLFMDLDGFKAVNDAYGHHLGDLLLIEVAERIRANVRAQDTIARLGGDEFVLLIEAREPADAAT
LAEKLVKRISQPYQISRHEVRISASIGIALYPGDGQTRHELMINADAAMYHAKDQGRNGYCFFESSMNANAQ
EQLQLLHDLRQALERRQLVLHYQPKVLAPNGPMVGVEALLRWEHPQHGLIPPDQFLPLAEKTGLIVQIGEWV
LDEACRQMRLWLDGGHAEWNIAVNLSALQFAHAGLVDSVRNALLRHSLEPSHLILEVTESTAMRDADASLVI
LEQLSAMGVGISIDDFGTGYSSLLYLKRLPASELKIDRGFINELAHDSDDAAIVSAIVALGRTLNLKIVAEG
VETEAQQEFLTRLGCNSLQGFLLGRPMPAEQLLASVA*
AnnotationID:351GeneID:342
AnnotatorUID: diggins
Modification Date/Time: 2005-06-01 06:06:21
Gene Name:
Confidence Code:4
GeneProduct:putative integral membrane sensor domain
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG5001,COG3300
Secondary Functional Category(ies):signal transduction mechanisms
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAD14038.1| (AL646059) PROBABLE TRANSMEMBRANE PROTEIN [Ralstonia solanacearum]
          Length = 701

 Score =  960 bits (2481), Expect = 0.0
 Identities = 483/681 (70%), Positives = 568/681 (83%)

>gb|AAN69182.1|AE016552_4 (AE016787) GGDEF domain protein [Pseudomonas putida KT2440]
          Length = 695

 Score =  888 bits (2294), Expect = 0.0
 Identities = 450/684 (65%), Positives = 543/684 (79%)

>emb|CAE33809.1| (BX640447) probable signalling protein [Bordetella bronchiseptica]
          Length = 691

 Score =  872 bits (2252), Expect = 0.0
 Identities = 443/683 (64%), Positives = 532/683 (77%), Gaps = 1/683 (0%)






 
Structural Features:
COG5001, Predicted signal transduction protein containing a 
membrane domain, an EAL and a GGDEF domain 
[Signal transduction mechanisms]
CD-Length = 663 residues,  92.3% aligned
Score =  341 bits (876), Expect = 2e-94

COG3300, COG3300, MHYT domain (predicted integral membrane sensor domain) 
[Signal transduction mechanisms]
CD-Length = 236 residues,  97.9% aligned
Score =  270 bits (693), Expect = 3e-73






   
Genomic Context:






   
Comment:


















    ReferenceID:687




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17829




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37198




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:342_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:342
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
563
                           PA1727_tr
                           translation of PA1727
                           685
                           99.27
                           99.70
                           0
                           3416.0
     

     
     
27527
                           gb|AAG05116.1|AE004599_1
                           (AE004599) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           685
                           99.27
                           99.70
                           0
                           3416.0
     

     
     
27528
                           emb|CAD14038.1|
                           (AL646059) PROBABLE TRANSMEMBRANE PROTEIN [Ralstonia solanacearum]
                           701
                           68.90
                           81.16
                           16
                           2481.0
     

     
     
27529
                           gb|AAN69182.1|AE016552_4
                           (AE016787) GGDEF domain protein [Pseudomonas putida KT2440]
                           695
                           64.74
                           78.12
                           10
                           2293.0
     

     
     
27531
                           emb|CAE37092.1|
                           (BX640428) probable signalling protein [Bordetella parapertussis]
                           691
                           64.10
                           76.98
                           6
                           2250.0
     

     






      

          
GC ORFID: 43344How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1727Glimmer Score: 

          
Start: 1189867Stop: 1187810

          
Length: 2058


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1727 translation of PA1727Homolog Bit Score 1320.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene1407 (ORF: BLASTX 829.0), t_PA4367 (ORF: BLASTX 380.0), psyr_15may02_Scaffold2_revised_gene4046 (ORF: BLASTX 371.0), t_PA1727 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCTTATCAGCAGCTACAACCAGGTTCTTGTCGCCTTTTCCCTGATTGTGGCCATCCTGGCGTCCTACACC 
GCTCTCGACATGGCCGGCCGGGTGACCCTGGCGAAAGGCCGCGAGGCGCTCTCCTGGCTGATCGGCGGCGCT 
TTCGCCATGGGCTTCGGCATCTGGTCGATGCATTTCGTCGGCATGCTCGCCTTCAGCCTGCCGATCCCGCTC 
GGCTACGACCTGGGCCTGACCCTGCTGTCGCTGCTGCTGGCCGTCGGCAGTTCGGCCTTCGCCCTCTGGCTG 
GTGTGCCAGGCGGAACTCCCCTGGCAACGCCTGGCGCTGGGCGCCCTGCTGATAGGCAGCGGCATCGCCGCC 
ATGCACTACACCGGGATGGCCGCCCTGCTGATGATGCCGGGGATCGTCTACGACCCGCTGTGGCTCGGCCTC 
TCCATCCTGATCGCGGTGATCGCCTCCGGCGCCGCGCTGTGGATCGCCTTCCGCCTGCGCCATGGCAGCCGG 
CGCATCGTCCTGGTCCGGGCCGGCGCCGCCCTGGTGATGGGCTGCGCCATCGTCGGCATGCACTACACCGGG 
ATGGCCGCCGCGCAGTTCCCCCTGGGCAGCTTCTGCGGCGCCGCCGGCCGAGGCATCGACAACGGCTGGCTG 
GCGGTGCTGGTCATCGTGATCACCCTGGCGGTGATCGCCATCGCCCTGATCGTCTCGGTGCTGGACTCGCGC 
CTGGAGGCGCGTACCTCGGTGCTCGCCACCTCCCTCGCACGAGCCAACCGCGAGCTGATCCAGTTGGCCCTG 
CACGACAACCTGACCAAGCTGCCCAACCGCATGCTCCTCGACGACCGCCTGGAGCAGGCGATCCAGCAGGCG 
ATCCGCGACGATCGCCGGTTCGCCGTGCTGTTCATGGACCTGGACGGCTTCAAGGCGGTCAACGATGCCTAC 
GGCCATCACCTCGGCGACCTGTTGCTGATCGAAGTCGCCGAGCGTATCCGCGCCAACGTCCGCGCCCAGGAC 
ACCATCGCCCGCCTCGGCGGCGACGAGTTCGTCCTGCTGATCGAGGCCCGCGAGCCCGCCGACGCCGCGACC 
CTGGCCGAGAAGCTGGTGAAGCGGATCAGCCAGCCGTACCAGATATCCCGCCACGAGGTGCGGATCTCGGCG 
AGCATCGGCATCGCGCTCTACCCCGGCGACGGGCAGACCCGCCACGAACTGATGATCAATGCCGACGCGGCG 
ATGTATCACGCCAAGGACCAGGGACGGAACGGCTACTGCTTCTTCGAGAGTTCGATGAACGCCAACGCCCAG 
GAACAGTTGCAACTGCTCCATGACCTGCGCCAGGCCCTGGAGCGCCGGCAGTTGGTCTTGCACTACCAACCC 
AAGGTACTGGCGCCGAACGGACCGATGGTCGGCGTGGAAGCGCTGCTGCGCTGGGAGCATCCGCAACACGGA 
CTGATCCCCCCCGACCAGTTCCTGCCGCTGGCGGAAAAAACCGGCCTGATCGTGCAGATCGGCGAGTGGGTG 
CTCGACGAAGCCTGCCGGCAGATGCGCCTCTGGCTGGACGGCGGGCATGCGGAGTGGAACATCGCGGTGAAC 
CTTTCGGCCCTGCAGTTCGCCCATGCCGGCCTGGTCGACTCGGTGCGCAACGCACTCCTGCGCCACAGCCTG 
GAGCCCAGCCACCTGATCCTCGAGGTGACCGAATCGACCGCCATGCGCGATGCCGATGCCAGCCTGGTGATC 
CTCGAGCAGTTGTCGGCGATGGGCGTCGGCATCTCCATCGACGACTTCGGCACCGGCTACTCCAGCCTGCTC 
TATCTCAAGCGCCTGCCGGCGAGCGAACTGAAGATCGACCGTGGCTTCATCAACGAGCTGGCCCACGACAGC 
GACGACGCCGCGATCGTCTCGGCGATCGTCGCCCTCGGCCGCACGCTGAACCTGAAGATCGTCGCCGAGGGC 
GTGGAAACCGAGGCCCAGCAGGAGTTCCTGACCCGCCTCGGCTGCAATTCGCTGCAAGGCTTCCTGCTCGGC 
AGGCCGATGCCGGCCGAGCAGTTGCTCGCCAGCGTCGCCTGA