ViewGene
Locus Name:
GeneID:
Location:

GeneID:3419
TrivialName: PA14_06040
AnnotatorUID: danlee
Modification Date/Time:2006-06-02 23:11:42
LocusName:PA14_06040
PAO1 Ortholog Locus:PA0462
Sequence Length:705
Protein Length:234
Start: 535279
Stop: 535983
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03851.1|AE004484_3 (AE004484) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 233/234 (99%), Positives = 234/234 (100%)
Sequence:
GTGTTGAGAAGCAGCAGAAGGCTGCTGGTCAGGCCGGTCAACAGTTCCCGCATGGTTGGTTTCCCTGTCCTG
GGTGTGGGTCGACGCGGCCCATCATACGCATCCGCGCCGCGCCGCCCAAGCCGCCGGCGTGGCGAACGAAAC
CGCGCCGTGCTAGTCCTATGTGGACCTCGTATCACTTCAGGAGATGCCCGCGTGAAGCGTGCCCTTGCCTTG
CTCTCGCTGTTCGCCCTGCCGGTCCTCGCCGCCGAGCCCAACCTCTACGGCCGCTACGAATGGGTCTCCCTG
CCGGAGCTGGACCGCACCCTGCAGGCGAAGATGGACACCGGCGCCTACACCTCCTCGCTGTCGGCCAAGGAC
ATCGAGCTGTTCCAGCGCGACGGCGAGGAGTGGGTGCGCTTCCGCCTGGCCACCAAGGAGGCCGACGGCTCG
GTGTTCGAGCACAAGCTGGCGCGCATCGGCAAGATCAAGAACCGCGCCGACAACCGCAACGGCGAGGACGAG
GATGAGGACCGCCTGAGCGAACGCCCGGTGATCGACCTGCAGGTCTGCCTGGGCGGAGCGATGAAGACCATC
GAGGTCAACCTCACCGACCGCAGCGCCTTCAACTATCCGTTCCTGATGGGCACCAAGGGCTTGCGCAAATTC
CACGTCGCGGTCGATCCCTCCGAGCGCTTCGTCGCCGACAAGCCCACCTGCAAGTAA
Translation:
MLRSSRRLLVRPVNSSRMVGFPVLGVGRRGPSYASAPRRPSRRRGERNRAVLVLCGPRITSGDARVKRALAL
LSLFALPVLAAEPNLYGRYEWVSLPELDRTLQAKMDTGAYTSSLSAKDIELFQRDGEEWVRFRLATKEADGS
VFEHKLARIGKIKNRADNRNGEDEDEDRLSERPVIDLQVCLGGAMKTIEVNLTDRSAFNYPFLMGTKGLRKF
HVAVDPSERFVADKPTCK*
AnnotationID:3427GeneID:3419
AnnotatorUID: diggins
Modification Date/Time: 2005-03-27 08:08:47
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA0462
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:14831




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23983




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33770




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3419_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3419
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5471
                           PA0462_tr
                           translation of PA0462
                           234
                           99.57
                           99.99
                           0
                           1191.0
     

     
     
153077
                           gb|AAG03851.1|AE004484_3
                           (AE004484) hypothetical protein PA0462 [Pseudomonas aeruginosa PAO1]
                           234
                           99.14
                           99.99
                           0
                           1188.0
     

     
     
153078
                           gb|AAN65964.1|AE016224_8
                           (AE016775) conserved hypothetical protein [Pseudomonas putida KT2440]
                           235
                           46.80
                           58.72
                           70
                           575.0
     

     
     
153079
                           gb|AAO53995.1|
                           (AE016857) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           236
                           43.64
                           57.62
                           71
                           543.0
     

     
     
5472
                           PA1768_tr
                           translation of PA1768
                           245
                           37.95
                           48.57
                           77
                           412.0
     

     






      

          
GC ORFID: 46421How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0462Glimmer Score: 

          
Start: 6336621Stop: 6337325

          
Length: 705


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA0462 translation of PA0462Homolog Bit Score 463.0

          
Other Homologs:  t_PA1768 (ORF: BLASTX 160.0), psyr_15may02_Scaffold1_revised_gene374 (ORF: BLASTX 160.0), t_PA0462 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGTTGAGAAGCAGCAGAAGGCTGCTGGTCAGGCCGGTCAACAGTTCCCGCATGGTTGGTTTCCCTGTCCTG 
GGTGTGGGTCGACGCGGCCCATCATACGCATCCGCGCCGCGCCGCCCAAGCCGCCGGCGTGGCGAACGAAAC 
CGCGCCGTGCTAGTCCTATGTGGACCTCGTATCACTTCAGGAGATGCCCGCGTGAAGCGTGCCCTTGCCTTG 
CTCTCGCTGTTCGCCCTGCCGGTCCTCGCCGCCGAGCCCAACCTCTACGGCCGCTACGAATGGGTCTCCCTG 
CCGGAGCTGGACCGCACCCTGCAGGCGAAGATGGACACCGGCGCCTACACCTCCTCGCTGTCGGCCAAGGAC 
ATCGAGCTGTTCCAGCGCGACGGCGAGGAGTGGGTGCGCTTCCGCCTGGCCACCAAGGAGGCCGACGGCTCG 
GTGTTCGAGCACAAGCTGGCGCGCATCGGCAAGATCAAGAACCGCGCCGACAACCGCAACGGCGAGGACGAG 
GATGAGGACCGCCTGAGCGAACGCCCGGTGATCGACCTGCAGGTCTGCCTGGGCGGAGCGATGAAGACCATC 
GAGGTCAACCTCACCGACCGCAGCGCCTTCAACTATCCGTTCCTGATGGGCACCAAGGGCTTGCGCAAATTC 
CACGTCGCGGTCGATCCCTCCGAGCGCTTCGTCGCCGACAAGCCCACCTGCAAGTAA