ViewGene

Locus Name:
GeneID:
Location:

GeneID:3417
TrivialName: PA14_38660
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_38660
PAO1 Ortholog Locus:PA1999
Sequence Length:699
Protein Length:232
Start: 3448661
Stop: 3447963
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05387.1|AE004626_6 (AE004626) probable CoA transferase, subunit A [Pseudomonas aeruginosa PAO1]
Identities = 232/232 (100%), Positives = 232/232 (100%)
Sequence:
ATGAGCGGACTCGACAAGCGAGTAGGCAGTTACGAAGAGGCCCTCGAAGGCCTGACCGACGGCATGACCGTC
CTCGCCGGGGGCTTCGGCCTCTGCGGGATTCCCGAGAACCTGATCGCGGAAATCCGCCGGCGCGGGGTCAGG
GACCTCACGGTGGTCTCGAACAACTGCGGCGTCGACGGTTTCGGCCTCGGCGTGCTGCTGGAAGACCGGCAG
ATCCGCAAGATGATCGCCTCCTACGTCGGCGAGAACGCCCTGTTCGAGCAACAACTGCTCAGTGGCGAGCTG
GAAGTCGAACTGACCCCGCAAGGCTCGCTGGCCGAGAAGATCCGCGCCGGCGGCGCCGGCATCCCGGCCTTC
TTCACCGCCACCGGCTACGGCACCCCGGTCGCCGAGGGCAAGGAGGCGCGCGAGTTCAATGGCCGCCACTAC
ATCCTCGAGCCGGCCATCACCGGCGACTTCGCCATCGTCAAGGGCTGGAAGGCCGACCATTTCGGCAACGTC
GTCTATCGCCACACCGCGCAGAACTTCAACCCGCTGGTCGCCACCGCCGGGCGCATCACGGTGGTCGAGGTG
GAGGAGATCGTCGAGCCCGGCGAACTGGACCCGACGCAAATCCACACCCCCGGCATCTACGTCGACCGGATC
ATCCAGGGTCGCTTCGAGAAACGCATCGAGAAACGCACGCTGCGCGCCTGA
Translation:
MSGLDKRVGSYEEALEGLTDGMTVLAGGFGLCGIPENLIAEIRRRGVRDLTVVSNNCGVDGFGLGVLLEDRQ
IRKMIASYVGENALFEQQLLSGELEVELTPQGSLAEKIRAGGAGIPAFFTATGYGTPVAEGKEAREFNGRHY
ILEPAITGDFAIVKGWKADHFGNVVYRHTAQNFNPLVATAGRITVVEVEEIVEPGELDPTQIHTPGIYVDRI
IQGRFEKRIEKRTLRA*
AnnotationID:3425GeneID:3417
AnnotatorUID: diggins
Modification Date/Time: 2005-03-02 18:06:04
Gene Name:
Confidence Code:3
GeneProduct:putative CoA transferase, subunit A
Cell Localization:()
Synonyms:scoA
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(13) Fatty acid and phospholipid metabolism
Alternate Gene Product Name:succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A
Functional Category Confidence Code:5
COGs:COG1788,pfam01144
Secondary Functional Category(ies):central intermediary metabolism
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAO56930.1| (AE016868) 3-oxoacid CoA-transferase, subunit A family [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 233

 Score =  407 bits (1047), Expect = e-113
 Identities = 196/231 (84%), Positives = 219/231 (94%)

>gb|AAN54944.1|AE015632_10 (AE015632) acetate CoA-transferase, subunit A [Shewanella
           oneidensis MR-1]
          Length = 234

 Score =  351 bits (901), Expect = 2e-96
 Identities = 170/232 (73%), Positives = 199/232 (85%)

>emb|CAB15925.1| (Z99123) succinyl CoA:3-oxoacid CoA-transferase (subunit A)
           [Bacillus subtilis subsp. subtilis str. 168]
          Length = 238

 Score =  308 bits (790), Expect = 1e-83
 Identities = 152/229 (66%), Positives = 185/229 (80%), Gaps = 1/229 (0%)
Structural Features:
COG1788, AtoD, Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit 
[Lipid metabolism]
CD-Length = 220 residues,  98.2% aligned
Score =  304 bits (779), Expect = 7e-84
Identities = 123/216 (56%), Positives = 161/216 (74%)

pfam01144, CoA_trans, Coenzyme A transferase. 
CD-Length = 218 residues,  94.5% aligned
Score =  211 bits (539), Expect = 6e-56
Identities = 116/208 (55%), Positives = 142/208 (68%), Gaps = 8/208 (3%)
Genomic Context:
Comment:
ReferenceID:6837
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:23979
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:32727
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:3417_cdd.html
URL:
Homologs By Global Alignment
Gene ID:3417

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
5469 PA1999_tr translation of PA1999 232 99.99 99.99 0 1192.0
152951 gb|AAG05387.1|AE004626_6 (AE004626) probable CoA transferase, subunit A [Pseudomonas aeruginosa PAO1] 232 99.99 99.99 0 1192.0
152953 gb|AAN68730.1|AE016505_3 (AE016785) CoA-transferase, subunit A, putative [Pseudomonas putida KT2440] 232 85.77 94.39 0 1041.0
152952 gb|AAO56930.1| (AE016868) 3-oxoacid CoA-transferase, subunit A family [Pseudomonas syringae pv. tomato str. DC3000] 233 84.12 93.99 1 1046.0
152954 gb|AAN54944.1|AE015632_10 (AE015632) acetate CoA-transferase, subunit A [Shewanella oneidensis MR-1] 234 72.64 85.04 2 901.0
GC ORFID: 46419How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA1999Glimmer Score:
Start: 1505250Stop: 1505948
Length: 699
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA1999 translation of PA1999Homolog Bit Score 463.0
Other Homologs: psyr_15may02_Scaffold9_revised_gene8108 (ORF: BLASTX 410.0), t_PA1999 (ORF: GLIMMER)
GC ORF Sequence
ATGAGCGGACTCGACAAGCGAGTAGGCAGTTACGAAGAGGCCCTCGAAGGCCTGACCGACGGCATGACCGTC
CTCGCCGGGGGCTTCGGCCTCTGCGGGATTCCCGAGAACCTGATCGCGGAAATCCGCCGGCGCGGGGTCAGG
GACCTCACGGTGGTCTCGAACAACTGCGGCGTCGACGGTTTCGGCCTCGGCGTGCTGCTGGAAGACCGGCAG
ATCCGCAAGATGATCGCCTCCTACGTCGGCGAGAACGCCCTGTTCGAGCAACAACTGCTCAGTGGCGAGCTG
GAAGTCGAACTGACCCCGCAAGGCTCGCTGGCCGAGAAGATCCGCGCCGGCGGCGCCGGCATCCCGGCCTTC
TTCACCGCCACCGGCTACGGCACCCCGGTCGCCGAGGGCAAGGAGGCGCGCGAGTTCAATGGCCGCCACTAC
ATCCTCGAGCCGGCCATCACCGGCGACTTCGCCATCGTCAAGGGCTGGAAGGCCGACCATTTCGGCAACGTC
GTCTATCGCCACACCGCGCAGAACTTCAACCCGCTGGTCGCCACCGCCGGGCGCATCACGGTGGTCGAGGTG
GAGGAGATCGTCGAGCCCGGCGAACTGGACCCGACGCAAATCCACACCCCCGGCATCTACGTCGACCGGATC
ATCCAGGGTCGCTTCGAGAAACGCATCGAGAAACGCACGCTGCGCGCCTGA