ViewGene
Locus Name:
GeneID:
Location:

GeneID:3416
TrivialName: PA14_41260
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_41260
PAO1 Ortholog Locus:PA1799
Sequence Length:708
Protein Length:235
Start: 3682244
Stop: 3682951
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05188.1|AE004606_2 (AE004606) probable two-component response regulator [Pseudomonas aeruginosa PAO1]
Identities = 233/235 (99%), Positives = 234/235 (99%)
Sequence:
ATGGACTGCCCTACCCTCAGCAAGGTATTGCTCGTCGAAGACGACCAGAAGCTCGCCCGCCTGATTGCCAGC
TTCCTTTCCCAGCATGGTTTCGAAGTGCGCCAGGTGCATCGCGGTGATGCCGCGTTCGCCGCTTTCCTCGAC
TTCAAGCCGCAAGTGGTGGTTCTCGACCTCATGCTCCCCGGACAGAATGGTCTGCAGGTGTGCCGGGAGATC
CGCCGGGTCGCGAACCTGCCGATCCTCATACTCACCGCCCAGGAGGACGATCTTGATCACATCCTCGGCCTG
GAGTCCGGCGCCGACGACTACGTGATCAAGCCGATCGAGCCACCGGTGCTGCTCGCCCGCCTGCGCGCCCTG
ATGCGCCGGCACGCGCCCCTTCCCGCCTCCCCGGAAAGCCTGACATTCGGCAAGCTGAACATCGACCGACGG
CGGCGCGAAGCTGAACTCGAAGGCCGCGGCATAGAACTGACCACGATGGAGTTCGAGCTGCTCTGGCTGCTG
GCCAACCAGGCAGGGGAAATACTTTCCCGCGACGAGATCCTCAACCAGATCCGCGGCATCGGCTTCGACGGC
CTGAACCGCAGCGTCGACGTCTGCATCAGCAAGCTGCGCAATAAACTGAAGGACAATCCGCGCGAGCCGGTC
CGGATCAAGACCGTCTGGGGCAAGGGCTACCTGTTCAACCCGCTGGGCTGGGAACTCTGA
Translation:
MDCPTLSKVLLVEDDQKLARLIASFLSQHGFEVRQVHRGDAAFAAFLDFKPQVVVLDLMLPGQNGLQVCREI
RRVANLPILILTAQEDDLDHILGLESGADDYVIKPIEPPVLLARLRALMRRHAPLPASPESLTFGKLNIDRR
RREAELEGRGIELTTMEFELLWLLANQAGEILSRDEILNQIRGIGFDGLNRSVDVCISKLRNKLKDNPREPV
RIKTVWGKGYLFNPLGWEL*
AnnotationID:3424GeneID:3416
AnnotatorUID: diggins
Modification Date/Time: 2005-03-01 15:03:28
Gene Name:
Confidence Code:3
GeneProduct:putative two-component response regulator
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(28) Two-component regulatory systems
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0745,cd00383,cd00156
Secondary Functional Category(ies):transcriptional regulators
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAD16773.1| (AL646073) PROBABLE RESPONSE REGULATOR TRANSCRIPTION REGULATOR
           PROTEIN [Ralstonia solanacearum]
          Length = 243

 Score =  237 bits (604), Expect = 5e-62
 Identities = 121/240 (50%), Positives = 166/240 (69%), Gaps = 7/240 (2%)

>gb|AAN66805.1|AE016309_7 (AE016778) DNA-binding response regulator [Pseudomonas putida
           KT2440]
          Length = 232

 Score =  229 bits (583), Expect = 1e-59
 Identities = 115/228 (50%), Positives = 161/228 (70%), Gaps = 1/228 (0%)

>gb|AAN56581.1|AE015796_3 (AE015796) transcriptional regulatory protein RstA, putative
           [Shewanella oneidensis MR-1]
          Length = 237

 Score =  222 bits (565), Expect = 2e-57
 Identities = 111/227 (48%), Positives = 150/227 (66%), Gaps = 1/227 (0%)








 
Structural Features:
COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain 
and a winged-helix DNA-binding domain 
[Signal transduction mechanisms / Transcription]
CD-Length = 229 residues,  98.7% aligned
Score =  221 bits (564), Expect = 6e-59
Identities = 103/227 (45%), Positives = 143/227 (62%), Gaps = 5/227 (2%)

cd00383, trans_reg_C, Effector domain of response regulator. 
CD-Length = 95 residues, 100.0% aligned
Score =  110 bits (277), Expect = 1e-25

cd00156, REC, Signal receiver domain
CD-Length = 113 residues, 100.0% aligned
Score =  107 bits (269), Expect = 1e-24
Identities = 48/113 (42%), Positives = 75/113 (66%), Gaps = 1/113 (0%)







   
Genomic Context:






   
Comment:


















    ReferenceID:6835




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23977




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37121




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3416_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3416
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5465
                           PA1799_tr
                           translation of PA1799
                           235
                           99.14
                           99.57
                           0
                           1192.0
     

     
     
152815
                           gb|AAG05188.1|AE004606_2
                           (AE004606) probable two-component response regulator [Pseudomonas aeruginosa PAO1]
                           235
                           99.14
                           99.57
                           0
                           1192.0
     

     
     
152819
                           gb|AAG04546.1|AE004546_1
                           (AE004546) probable two-component response regulator [Pseudomonas aeruginosa PAO1]
                           240
                           51.66
                           67.91
                           9
                           573.0
     

     
     
152816
                           gb|AAQ58437.1|
                           (AE016912) probable two-component response regulator [Chromobacterium violaceum ATCC 12472]
                           242
                           51.65
                           69.83
                           12
                           628.0
     

     
     
5466
                           PA1157_tr
                           translation of PA1157
                           244
                           50.40
                           66.39
                           17
                           572.0
     

     






      

          
GC ORFID: 46418How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1799Glimmer Score: 

          
Start: 1271665Stop: 1270958

          
Length: 708


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1799 translation of PA1799Homolog Bit Score 463.0

          
Other Homologs:  t_PA1157 (ORF: BLASTX 227.0), psyr_15may02_Scaffold5_revised_gene6430 (ORF: BLASTX 216.0), t_PA5200 (ORF: BLASTX 177.0), psyr_15may02_Scaffold2_revised_gene3175 (ORF: BLASTX 168.0), t_PA3192 (ORF: BLASTX 150.0), t_PA1799 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGACTGCCCTACCCTCAGCAAGGTATTGCTCGTCGAAGACGACCAGAAGCTCGCCCGCCTGATTGCCAGC 
TTCCTTTCCCAGCATGGTTTCGAAGTGCGCCAGGTGCATCGCGGTGATGCCGCGTTCGCCGCTTTCCTCGAC 
TTCAAGCCGCAAGTGGTGGTTCTCGACCTCATGCTCCCCGGACAGAATGGTCTGCAGGTGTGCCGGGAGATC 
CGCCGGGTCGCGAACCTGCCGATCCTCATACTCACCGCCCAGGAGGACGATCTTGATCACATCCTCGGCCTG 
GAGTCCGGCGCCGACGACTACGTGATCAAGCCGATCGAGCCACCGGTGCTGCTCGCCCGCCTGCGCGCCCTG 
ATGCGCCGGCACGCGCCCCTTCCCGCCTCCCCGGAAAGCCTGACATTCGGCAAGCTGAACATCGACCGACGG 
CGGCGCGAAGCTGAACTCGAAGGCCGCGGCATAGAACTGACCACGATGGAGTTCGAGCTGCTCTGGCTGCTG 
GCCAACCAGGCAGGGGAAATACTTTCCCGCGACGAGATCCTCAACCAGATCCGCGGCATCGGCTTCGACGGC 
CTGAACCGCAGCGTCGACGTCTGCATCAGCAAGCTGCGCAATAAACTGAAGGACAATCCGCGCGAGCCGGTC 
CGGATCAAGACCGTCTGGGGCAAGGGCTACCTGTTCAACCCGCTGGGCTGGGAACTCTGA