ViewGene
Locus Name:
GeneID:
Location:

GeneID:3415
TrivialName: PA14_47960
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_47960
PAO1 Ortholog Locus:PA1256
Sequence Length:723
Protein Length:240
Start: 4269374
Stop: 4270096
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04645.1|AE004555_5 (AE004555) probable ATP-binding component of ABC transporter [Pseudomonas aeruginosa PAO1]
Identities = 237/240 (98%), Positives = 238/240 (99%)
Sequence:
ATGATCGAGATCAGCGGCGTGCACAAGGCCTACGGCCAGTTCGAGGTGGTCAAGGGCGTCGACCTGAGGGTG
GACAAGGGCGAGGTGCTGTCGATCATCGGCGGCTCCGGTTCCGGCAAGTCGACCCTGCTGATGTGCATCAAC
GGCCTGGAGCCGATCCAGCGCGGCAGCATCCGCGTCGACGGCATCGACGTGCATGCCCGCGGCACCGACCTC
AACCGCCTGCGGCGGAAGATCGGCATCGTCTTCCAGCAGTGGAACGCCTTCCCCCACCTGACCGTGCTGGAA
AACGTCATGCTCGCGCCGCGCAAGGTGCTCGGCAAGAGCCGCGCCGAAGCCGAGGCGATGGCGCTGAAGCAA
CTTACCCACGTCGGTCTCGGCGACAAGCTCAAGGTCTTCCCCCAGCGCCTTTCCGGCGGCCAGCAACAGCGC
ATGGCGATCGCCCGGGCGCTGGCGATGTCGCCGGACTACATGCTGTTCGACGAAGCCACCTCGGCGCTCGAC
CCGCAGTTGGTCGGCGAGGTGCTGGACACCATGCGCCTGCTCGCCGAGGAAGGCATGACCATGGTCCTGGTC
ACCCACGAGATCCGCTTCGCCCGCGACGTGTCCGACCGGGTGGCGTTCTTCCGCAATGGCCTGGTCCACGAG
ATCGGCACCCCCGACCAGGTGATCGGCAACCCGCAGCGGCCGGAGACGGTGGAATTCCTCCGCTCGGTGCTC
TGA
Translation:
MIEISGVHKAYGQFEVVKGVDLRVDKGEVLSIIGGSGSGKSTLLMCINGLEPIQRGSIRVDGIDVHARGTDL
NRLRRKIGIVFQQWNAFPHLTVLENVMLAPRKVLGKSRAEAEAMALKQLTHVGLGDKLKVFPQRLSGGQQQR
MAIARALAMSPDYMLFDEATSALDPQLVGEVLDTMRLLAEEGMTMVLVTHEIRFARDVSDRVAFFRNGLVHE
IGTPDQVIGNPQRPETVEFLRSVL*
AnnotationID:3423GeneID:3415
AnnotatorUID: diggins
Modification Date/Time: 2005-02-22 11:11:02
Gene Name:
Confidence Code:3
GeneProduct:putative ATP-binding component of ABC transporter
Cell Localization:()
Synonyms:glnQ
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:putative glutamine ABC transporter, ATP-binding subunit
Functional Category Confidence Code:5
COGs:COG1126,COG4598,cd00267
Secondary Functional Category(ies):amino acid transport and metabolism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAC48656.1| (AL603642) putative amino acid ABC transporter ATP-binding protein
           [Sinorhizobium meliloti]
          Length = 240

 Score =  369 bits (947), Expect = e-102
 Identities = 180/239 (75%), Positives = 209/239 (87%)

>gb|AAB90561.1| (AE001058) glutamine ABC transporter, ATP-binding protein (glnQ)
           [Archaeoglobus fulgidus DSM 4304]
          Length = 242

 Score =  271 bits (692), Expect = 3e-72
 Identities = 136/239 (56%), Positives = 178/239 (74%)

>gb|AAO58674.1| (AE016875) amino acid ABC transporter, ATP-binding protein
           [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 244

 Score =  264 bits (674), Expect = 4e-70
 Identities = 133/236 (56%), Positives = 171/236 (72%)








 
Structural Features:
COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component 
[Amino acid transport and metabolism]
CD-Length = 240 residues,  99.6% aligned
Score =  368 bits (947), Expect = 3e-103
Identities = 146/240 (60%), Positives = 178/240 (74%), Gaps = 1/240 (0%)

COG4598, HisP, ABC-type histidine transport system, ATPase component 
[Amino acid transport and metabolism]
CD-Length = 256 residues,  97.3% aligned
Score =  285 bits (730), Expect = 4e-78

cd00267, ABC_ATPase, ABC (ATP-binding cassette) transporter nucleotide-binding domain
CD-Length = 217 residues, 100.0% aligned
Score =  191 bits (488), Expect = 5e-50
Identities = 93/221 (42%), Positives = 132/221 (59%), Gaps = 6/221 (2%)









   
Genomic Context:






   
Comment:


















    ReferenceID:6833




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23975




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37538




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3415_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3415
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5454
                           PA1256_tr
                           translation of PA1256
                           240
                           98.75
                           99.16
                           0
                           1191.0
     

     
     
152237
                           gb|AAG04645.1|AE004555_5
                           (AE004555) probable ATP-binding component of ABC transporter [Pseudomonas aeruginosa PAO1]
                           240
                           98.75
                           99.16
                           0
                           1191.0
     

     
     
152238
                           emb|CAC48656.1|
                           (AL603642) putative amino acid ABC transporter ATP-binding protein [Sinorhizobium meliloti]
                           240
                           75.00
                           87.08
                           0
                           945.0
     

     
     
152240
                           gb|AAK88769.1|
                           (AE008218) AGR_L_402p [Agrobacterium tumefaciens str. C58 (Cereon)]
                           240
                           73.75
                           87.08
                           0
                           929.0
     

     
     
152239
                           gb|AAL45475.1|
                           (AE009396) ABC transporter, nucleotide binding/ATPase protein [amino acid] [Agrobacterium tumefaciens str. C58 (U. Washington)]
                           240
                           73.75
                           87.08
                           0
                           929.0
     

     






      

          
GC ORFID: 46417How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1256Glimmer Score: 

          
Start: 684535Stop: 683813

          
Length: 723


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1256 translation of PA1256Homolog Bit Score 463.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3873 (ORF: BLASTX 270.0), t_PA4192 (ORF: BLASTX 253.0), t_PA5074 (ORF: BLASTX 252.0), t_PA5152 (ORF: BLASTX 245.0), psyr_15may02_Scaffold6_revised_gene6950 (ORF: BLASTX 244.0), psyr_15may02_Scaffold7_revised_gene7435 (ORF: BLASTX 239.0), psyr_15may02_Scaffold5_revised_gene6103 (ORF: BLASTX 236.0), t_PA2926 (ORF: BLASTX 233.0), psyr_15may02_Scaffold3_revised_gene4390 (ORF: BLASTX 231.0), psyr_15may02_Scaffold5_revised_gene6133 (ORF: BLASTX 229.0), psyr_15may02_Scaffold2_revised_gene3825 (ORF: BLASTX 224.0), t_PA0892 (ORF: BLASTX 223.0), psyr_15may02_Scaffold8_revised_gene7812 (ORF: BLASTX 221.0), t_PA1339 (ORF: BLASTX 219.0), psyr_15may02_Scaffold7_revised_gene7195 (ORF: BLASTX 218.0), psyr_15may02_Scaffold7_revised_gene7291 (ORF: BLASTX 216.0), psyr_15may02_Scaffold7_revised_gene7315 (ORF: BLASTX 136.0), t_PA4594 (ORF: BLASTX 119.0), t_PA1256 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGATCGAGATCAGCGGCGTGCACAAGGCCTACGGCCAGTTCGAGGTGGTCAAGGGCGTCGACCTGAGGGTG 
GACAAGGGCGAGGTGCTGTCGATCATCGGCGGCTCCGGTTCCGGCAAGTCGACCCTGCTGATGTGCATCAAC 
GGCCTGGAGCCGATCCAGCGCGGCAGCATCCGCGTCGACGGCATCGACGTGCATGCCCGCGGCACCGACCTC 
AACCGCCTGCGGCGGAAGATCGGCATCGTCTTCCAGCAGTGGAACGCCTTCCCCCACCTGACCGTGCTGGAA 
AACGTCATGCTCGCGCCGCGCAAGGTGCTCGGCAAGAGCCGCGCCGAAGCCGAGGCGATGGCGCTGAAGCAA 
CTTACCCACGTCGGTCTCGGCGACAAGCTCAAGGTCTTCCCCCAGCGCCTTTCCGGCGGCCAGCAACAGCGC 
ATGGCGATCGCCCGGGCGCTGGCGATGTCGCCGGACTACATGCTGTTCGACGAAGCCACCTCGGCGCTCGAC 
CCGCAGTTGGTCGGCGAGGTGCTGGACACCATGCGCCTGCTCGCCGAGGAAGGCATGACCATGGTCCTGGTC 
ACCCACGAGATCCGCTTCGCCCGCGACGTGTCCGACCGGGTGGCGTTCTTCCGCAATGGCCTGGTCCACGAG 
ATCGGCACCCCCGACCAGGTGATCGGCAACCCGCAGCGGCCGGAGACGGTGGAATTCCTCCGCTCGGTGCTC 
TGA