ViewGene
Locus Name:
GeneID:
Location:

GeneID:3414
TrivialName: PA14_49440
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_49440
PAO1 Ortholog Locus:PA1157
Sequence Length:711
Protein Length:236
Start: 4393970
Stop: 4393260
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04546.1|AE004546_1 (AE004546) probable two-component response regulator [Pseudomonas aeruginosa PAO1]
Identities = 236/236 (100%), Positives = 236/236 (100%)
Sequence:
GTGGAGCAAGAAGCCTGGCGCATCCTGATCGTCGAGGACGATCGACGCCTGGCCGAGCTGACCCGGGAATAC
CTGGAAGGCAACGGCCTGAAGGTCGACATCGAAGCCAACGGCGCACTGGCGGCGGCGCGTATCCTCGCCGAA
CGCCCGGACCTGGTGGTGCTCGACCTGATGCTGCCGGGCGAGGACGGCCTGTCCATCTGCCGCCAGGTGCGT
CCGCAGTTCGACGGTCCGATCCTGATGCTCACCGCGCGCACCGACGACATGGACGAGGTGCTCGGCCTGGAG
ATGGGCGCCGACGACTACGTGTGCAAGCCGGTGCGCCCGCGTGTGCTGCTGGCGCGCATCCGTGCCCTGTTG
CGGCGCAGCGAGGCGCCGGAAGCGGGCGCCCCGGCGGCGGACAGCAAACGCCTGGCGTTCGGTCGCCTGGTG
ATCGACAACGCGATGCGCGAGGCCTGGCTGGACGGGACCACCATCGAGCTGACCAGCGCCGAATTCGACCTG
CTCTGGCTGCTGGCGGCGAACGCCGGGCGGATTCTCTCCCGCGAGGAGATCTTCAACGCCCTGCGCGGCATC
GAGTACGACGGCCAGGACCGCTCCATCGACGTGCGCATCTCGCGGATCCGCCCGAAGATCGGCGATGACCCG
ATGCACCCGCGGCTGATCAAGACCGTGCGCAGCAAGGGCTACCTGTTCGTCGGAGAGGGCTGA
Translation:
MEQEAWRILIVEDDRRLAELTREYLEGNGLKVDIEANGALAAARILAERPDLVVLDLMLPGEDGLSICRQVR
PQFDGPILMLTARTDDMDEVLGLEMGADDYVCKPVRPRVLLARIRALLRRSEAPEAGAPAADSKRLAFGRLV
IDNAMREAWLDGTTIELTSAEFDLLWLLAANAGRILSREEIFNALRGIEYDGQDRSIDVRISRIRPKIGDDP
MHPRLIKTVRSKGYLFVGEG*
AnnotationID:3422GeneID:3414
AnnotatorUID: danlee
Modification Date/Time: 2004-09-14 16:04:47
Gene Name:
Confidence Code:3
GeneProduct:probable two-component response regulator
Cell Localization:(1) Cytoplasmic
Synonyms:PA1157
Cell Localization Confidence Code:2
MolecularFunction:
Functional Category:(28) Two-component regulatory systems
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0745, cd00156, pfam00486
Secondary Functional Category(ies):Transcriptional regulators
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a 
winged-helix DNA-binding domain 
       CD-Length = 229 residues,  99.6% aligned
       Score =  219 bits (560), Expect = 2e-58
cd00156, REC, Signal receiver domain. Score: 102, 3e-23






   
Genomic Context:
Downstream gene is presumed sensor histidine kinase that controls this putative 
transcriptional regulator.






   
Comment:


















    ReferenceID:14829




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23973




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3414
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5448
                           PA1157_tr
                           translation of PA1157
                           236
                           99.99
                           99.99
                           0
                           1192.0
     

     
     
151976
                           gb|AAG04546.1|AE004546_1
                           (AE004546) probable two-component response regulator [Pseudomonas aeruginosa PAO1]
                           236
                           99.57
                           99.99
                           0
                           1189.0
     

     
     
151977
                           gb|AAO55192.1|
                           (AE016861) DNA-binding response regulator [Pseudomonas syringae pv. tomato str. DC3000]
                           249
                           72.28
                           80.32
                           15
                           922.0
     

     
     
151978
                           gb|AAN66805.1|AE016309_7
                           (AE016778) DNA-binding response regulator [Pseudomonas putida KT2440]
                           239
                           70.71
                           83.26
                           10
                           848.0
     

     
     
151979
                           gb|AAQ58437.1|
                           (AE016912) probable two-component response regulator [Chromobacterium violaceum ATCC 12472]
                           240
                           57.50
                           69.58
                           7
                           663.0
     

     






      

          
GC ORFID: 46416How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1157Glimmer Score: 

          
Start: 559938Stop: 560648

          
Length: 711


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1157 translation of PA1157Homolog Bit Score 463.0

          
Other Homologs:  psyr_15may02_Scaffold5_revised_gene6430 (ORF: BLASTX 361.0), t_PA1799 (ORF: BLASTX 228.0), t_PA4101 (ORF: BLASTX 193.0), psyr_15may02_Scaffold1_revised_gene419 (ORF: BLASTX 181.0), t_PA5200 (ORF: BLASTX 177.0), psyr_15may02_Scaffold3_revised_gene4416 (ORF: BLASTX 154.0), t_PA3192 (ORF: BLASTX 154.0), t_PA4885 (ORF: BLASTX 145.0), psyr_15may02_Scaffold9_revised_gene8194 (ORF: BLASTX 134.0), t_PA1157 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGGAGCAAGAAGCCTGGCGCATCCTGATCGTCGAGGACGATCGACGCCTGGCCGAGCTGACCCGGGAATAC 
CTGGAAGGCAACGGCCTGAAGGTCGACATCGAAGCCAACGGCGCACTGGCGGCGGCGCGTATCCTCGCCGAA 
CGCCCGGACCTGGTGGTGCTCGACCTGATGCTGCCGGGCGAGGACGGCCTGTCCATCTGCCGCCAGGTGCGT 
CCGCAGTTCGACGGTCCGATCCTGATGCTCACCGCGCGCACCGACGACATGGACGAGGTGCTCGGCCTGGAG 
ATGGGCGCCGACGACTACGTGTGCAAGCCGGTGCGCCCGCGTGTGCTGCTGGCGCGCATCCGTGCCCTGTTG 
CGGCGCAGCGAGGCGCCGGAAGCGGGCGCCCCGGCGGCGGACAGCAAACGCCTGGCGTTCGGTCGCCTGGTG 
ATCGACAACGCGATGCGCGAGGCCTGGCTGGACGGGACCACCATCGAGCTGACCAGCGCCGAATTCGACCTG 
CTCTGGCTGCTGGCGGCGAACGCCGGGCGGATTCTCTCCCGCGAGGAGATCTTCAACGCCCTGCGCGGCATC 
GAGTACGACGGCCAGGACCGCTCCATCGACGTGCGCATCTCGCGGATCCGCCCGAAGATCGGCGATGACCCG 
ATGCACCCGCGGCTGATCAAGACCGTGCGCAGCAAGGGCTACCTGTTCGTCGGAGAGGGCTGA