ViewGene
Locus Name:
GeneID:
Location:

GeneID:3413
TrivialName: PA14_55560
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_55560
PAO1 Ortholog Locus:PA0674
Sequence Length:717
Protein Length:238
Start: 4945123
Stop: 4944407
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04063.1|AE004503_1 (AE004503) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 238/238 (100%), Positives = 238/238 (100%)
Sequence:
ATGTCGATCCTCGGGGTGGCAAGGTCGTGCGCAGTGTCGTTGCTCGGTCTCGGCATGCTGCTGCCGGCGTCC
GGCGCCGTGCCGGGCGATGGCGGCAGGCCGCCGTTGCGCCTGGCGGTGCACGCGTTCGATATTCCTCCGCAG
AGCCTGGCATCGGCGCTGGTGACCTACAGCGGGGTGACGGGAATGGCGGTTCTGGTGGATGGCGAGCTGGCC
CGTGGACGGCGCTCGGCCCGCTTGCAGGGGCGCTTCACCGCCAGCGACGCCCTGACCCGACTGCTCGGCGGA
ACCGGCCTGATGGCGCGCTACACCAGCCAGGAAGCGTTCACCCTGCTGCCGGCGCAGGCCGTCAGGAACGCT
GCGCCGCTGCCGGCAGAGATGCCGAAGGTCGAGCAGCCGCTGGATCGGCGCTACGCGGGAGCGGTCCAGGCG
GCGCTGGAAGAACAGTTGTGCCGCTCGCCGCGCACTCGTCCGGGTACCTATCGCGCGGTGCTGCAACTCTGG
ATCGGTCGCTTCGGCGAGGTTCGCCACAGTCGCCTGCTCGGCTCGACCGGCGACCCGCAGCGGGACAGCGCC
CTGGTGGAAAGCCTGCGCGGCGTGCGGGTGATGCAGGCGACGCCCGCTACGCTGGCCCAGCCGCTGACCATC
CTGTTGCTGCCGAAGACGACGGGCAAGGCCATGGAATGCAAGCTGACGGAGGGAGTGGGAGGGTCATGA
Translation:
MSILGVARSCAVSLLGLGMLLPASGAVPGDGGRPPLRLAVHAFDIPPQSLASALVTYSGVTGMAVLVDGELA
RGRRSARLQGRFTASDALTRLLGGTGLMARYTSQEAFTLLPAQAVRNAAPLPAEMPKVEQPLDRRYAGAVQA
ALEEQLCRSPRTRPGTYRAVLQLWIGRFGEVRHSRLLGSTGDPQRDSALVESLRGVRVMQATPATLAQPLTI
LLLPKTTGKAMECKLTEGVGGS*
AnnotationID:3421GeneID:3413
AnnotatorUID: danlee
Modification Date/Time: 2004-03-11 14:02:57
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA0674, pigC
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:6829




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23971




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3413
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5447
                           PA0674_tr
                           translation of PA0674
                           238
                           99.99
                           99.99
                           0
                           1192.0
     

     
     
151974
                           gb|AAG04063.1|AE004503_1
                           (AE004503) hypothetical protein PA0674 [Pseudomonas aeruginosa PAO1]
                           238
                           99.99
                           99.99
                           0
                           1192.0
     

     
     
151975
                           gb|AAC15190.1|
                           (AF060193) ferrisiderophore receptor-like protein [Pseudomonas aeruginosa]
                           238
                           99.99
                           99.99
                           0
                           1192.0
     

     






      

          
GC ORFID: 46415How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0674Glimmer Score: 

          
Start: 8784Stop: 9500

          
Length: 717


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0674 translation of PA0674Homolog Bit Score 463.0

          
Other Homologs:  t_PA0674 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCGATCCTCGGGGTGGCAAGGTCGTGCGCAGTGTCGTTGCTCGGTCTCGGCATGCTGCTGCCGGCGTCC 
GGCGCCGTGCCGGGCGATGGCGGCAGGCCGCCGTTGCGCCTGGCGGTGCACGCGTTCGATATTCCTCCGCAG 
AGCCTGGCATCGGCGCTGGTGACCTACAGCGGGGTGACGGGAATGGCGGTTCTGGTGGATGGCGAGCTGGCC 
CGTGGACGGCGCTCGGCCCGCTTGCAGGGGCGCTTCACCGCCAGCGACGCCCTGACCCGACTGCTCGGCGGA 
ACCGGCCTGATGGCGCGCTACACCAGCCAGGAAGCGTTCACCCTGCTGCCGGCGCAGGCCGTCAGGAACGCT 
GCGCCGCTGCCGGCAGAGATGCCGAAGGTCGAGCAGCCGCTGGATCGGCGCTACGCGGGAGCGGTCCAGGCG 
GCGCTGGAAGAACAGTTGTGCCGCTCGCCGCGCACTCGTCCGGGTACCTATCGCGCGGTGCTGCAACTCTGG 
ATCGGTCGCTTCGGCGAGGTTCGCCACAGTCGCCTGCTCGGCTCGACCGGCGACCCGCAGCGGGACAGCGCC 
CTGGTGGAAAGCCTGCGCGGCGTGCGGGTGATGCAGGCGACGCCCGCTACGCTGGCCCAGCCGCTGACCATC 
CTGTTGCTGCCGAAGACGACGGGCAAGGCCATGGAATGCAAGCTGACGGAGGGAGTGGGAGGGTCATGA