ViewGene

Locus Name:
GeneID:
Location:

GeneID:3412
TrivialName: PA14_59900
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_59900
PAO1 Ortholog Locus:
Sequence Length:660
Protein Length:219
Start: 5333604
Stop: 5334263
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAP84153.1| (AY273869) conserved hypothetical protein [Pseudomonas aeruginosa]
Identities = 219/219 (100%), Positives = 219/219 (100%)
Sequence:
ATGAGTTTCAGAAAACACACTGCGCAACAGCAGGCACACATCAACACCTTCCGGTTCATCACCGGCTTCCTG
TGCATGGTCATCGTTGTGCTGGCCTACTGCGTCTGGGAAGCCCGTAAGGACCTCTGGATCCACATTCCGCCC
GACTTGCGCTCAGGAAGCACCCGGTTGTGGTGGGACATTCCGCCAGAGAGCGTCTATGCGTTCGGCCTCTAC
ATCTTCCAGCAGGTGCAGCGTTGGCCCAAGGACGGCGAGGTGGACTACAAGGGAAACCTGTTCCGCTACGCT
GCCTACCTCACTCCCTCCTGCAAAGTCTTCCTGGAGAAAGACTTTGAGTTTCGTCGTAACGCCGGCGAGCTC
AGGGGTCGCGAGCGCACCACCTCGGAAATCCCCGGTCGAGGCATTGGCGAGAGCAATGGCCGCGTGATCCAG
CACTCGATCAATGACTGGACCGTCAACTTGGACATGGACAGCACGGAGTATTACGCCGGCGAGAAGATCAAG
CGGGCGCTGGCCCGCTACCCGTTGCACGTTATCCGCGCCGACGTCGACCCGGAAACCAATCCCTTCGGCCTG
CAGTGGGACTGCTACTCCGACACGCCTCAACGTATCGAGCTTGAGGAGCCGGCCGCCCCCACCAAGCGGGAG
GGAGGTCTATGA
Translation:
MSFRKHTAQQQAHINTFRFITGFLCMVIVVLAYCVWEARKDLWIHIPPDLRSGSTRLWWDIPPESVYAFGLY
IFQQVQRWPKDGEVDYKGNLFRYAAYLTPSCKVFLEKDFEFRRNAGELRGRERTTSEIPGRGIGESNGRVIQ
HSINDWTVNLDMDSTEYYAGEKIKRALARYPLHVIRADVDPETNPFGLQWDCYSDTPQRIELEEPAAPTKRE
GGL*
AnnotationID:3420GeneID:3412
AnnotatorUID: diggins
Modification Date/Time: 2006-01-29 23:11:20
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
CDD Search: No hits above 0.01 threshold.
Genomic Context:
Comment:
ReferenceID:6827
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:23969
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:3412

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
151965 gb|AAP84153.1| (AY273869) conserved hypothetical protein [Pseudomonas aeruginosa] 219 99.99 99.99 0 1194.0
151966 gb|AAO54398.1| (AE016858) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000] 225 56.88 72.88 9 676.0
151969 gb|AAN62145.1|AF440523_52 (AF440523) hypothetical protein [Pseudomonas aeruginosa] 232 51.29 61.20 15 611.0
151968 gb|AAN62283.1|AF440524_70 (AF440524) hypothetical protein [Pseudomonas aeruginosa] 231 51.08 64.93 19 608.0
151970 emb|CAE92915.1| (AJ617740) hypothetical protein [Pseudomonas putida] 232 50.43 60.77 15 601.0
GC ORFID: 46414How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_RL026Glimmer Score:
Start: 4597283Stop: 4597942
Length: 660
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_RL026 219 Homolog: ORF113 / Hypothetical protein / P. putida / plasmid pWWO (CAC86816) translation of RL026Homolog Bit Score 464.0
Other Homologs: psyr_15may02_Scaffold10_revised_gene1640 (ORF: BLASTX 279.0), t_RL026 (ORF: GLIMMER)
GC ORF Sequence
ATGAGTTTCAGAAAACACACTGCGCAACAGCAGGCACACATCAACACCTTCCGGTTCATCACCGGCTTCCTG
TGCATGGTCATCGTTGTGCTGGCCTACTGCGTCTGGGAAGCCCGTAAGGACCTCTGGATCCACATTCCGCCC
GACTTGCGCTCAGGAAGCACCCGGTTGTGGTGGGACATTCCGCCAGAGAGCGTCTATGCGTTCGGCCTCTAC
ATCTTCCAGCAGGTGCAGCGTTGGCCCAAGGACGGCGAGGTGGACTACAAGGGAAACCTGTTCCGCTACGCT
GCCTACCTCACTCCCTCCTGCAAAGTCTTCCTGGAGAAAGACTTTGAGTTTCGTCGTAACGCCGGCGAGCTC
AGGGGTCGCGAGCGCACCACCTCGGAAATCCCCGGTCGAGGCATTGGCGAGAGCAATGGCCGCGTGATCCAG
CACTCGATCAATGACTGGACCGTCAACTTGGACATGGACAGCACGGAGTATTACGCCGGCGAGAAGATCAAG
CGGGCGCTGGCCCGCTACCCGTTGCACGTTATCCGCGCCGACGTCGACCCGGAAACCAATCCCTTCGGCCTG
CAGTGGGACTGCTACTCCGACACGCCTCAACGTATCGAGCTTGAGGAGCCGGCCGCCCCCACCAAGCGGGAG
GGAGGTCTATGA