ViewGene

Locus Name:
GeneID:
Location:

GeneID:3410
TrivialName: PA14_30010
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_30010
PAO1 Ortholog Locus:PA2638
Sequence Length:678
Protein Length:225
Start: 2598703
Stop: 2598026
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06026.1|AE004692_5 (AE004692) NADH dehydrogenase I chain B [Pseudomonas aeruginosa PAO1]
Identities = 225/225 (100%), Positives = 225/225 (100%)
Sequence:
ATGCAATACAAACTTACCCGGATCGATCCCGATGCGGCCAACGACCAATACCCGATAGGCGAACGGGAAACC
GTAGCCGACCCGCTGGTCGAGGGCCAGGTTCACAAGAACATCTTCATGGGCAAGCTCGAGGATGTGCTGAAC
TCCACCGTCAACTGGGGTCGCAAGAACTCGCTCTGGCCCTATAACTTCGGGCTGTCGTGCTGCTACGTGGAG
ATGACCACCGCCTTCACCGCGCCGCACGATATCGCCCGCTTCGGCGCCGAAGTGATCCGGGCGTCGCCGCGC
CAGGCCGACTTCATGGTCATCGCCGGCACCTGCTTCATCAAGATGGCCCCGGTCATCCAGCGCCTCTACGAG
CAGATGCTCGAACCCAAGTGGGTCATCTCCATGGGCTCGTGCGCCAATTCCGGCGGCATGTACGACATCTAT
TCGGTGGTCCAGGGGGTCGACAAGTTCCTCCCCGTGGACGTCTACATCCCCGGCTGCCCGCCCCGTCCGGAG
GCGTTCCTGCAAGGCCTGATGCTGCTGCAGGAATCCATCGGCCAGGAGCGCCGCCCGTTGTCCTGGGTCGTT
GGCGACCAGGGGGTCTACCGCGCCGAAATGCCGGCCCAGAAAGACCTGAAACGCGAGCAGCGCATCCAGGTG
ACCAACCTGCGCAGCCCCGACGAAGTGTGA
Translation:
MQYKLTRIDPDAANDQYPIGERETVADPLVEGQVHKNIFMGKLEDVLNSTVNWGRKNSLWPYNFGLSCCYVE
MTTAFTAPHDIARFGAEVIRASPRQADFMVIAGTCFIKMAPVIQRLYEQMLEPKWVISMGSCANSGGMYDIY
SVVQGVDKFLPVDVYIPGCPPRPEAFLQGLMLLQESIGQERRPLSWVVGDQGVYRAEMPAQKDLKREQRIQV
TNLRSPDEV*
AnnotationID:3418GeneID:3410
AnnotatorUID: diggins
Modification Date/Time: 2005-04-29 11:11:48
Gene Name:nuoB
Confidence Code:2
GeneProduct:NADH dehydrogenase I chain B
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0377
Secondary Functional Category(ies):
EC Number:1.6.5.3
Status:ACTIVE
Pathway:
Homology:
>gb|AAF97798.1|AF281148_2 (AF281148) NADH dehydrogenase I subunit B [Pseudomonas fluorescens]
          Length = 224

 Score =  440 bits (1131), Expect = e-123
 Identities = 212/225 (94%), Positives = 219/225 (97%), Gaps = 1/225 (0%)

>gb|AAN54093.1|AE015546_10 (AE015546) NADH dehydrogenase I, B subunit [Shewanella oneidensis
           MR-1]
          Length = 224

 Score =  381 bits (978), Expect = e-105
 Identities = 180/225 (80%), Positives = 204/225 (90%), Gaps = 1/225 (0%)

>gb|AAM85200.1|AE013766_3 (AE013766) NADH dehydrogenase I chain B [Yersinia pestis KIM]
          Length = 225

 Score =  375 bits (962), Expect = e-103
 Identities = 172/225 (76%), Positives = 200/225 (88%)

Structural Features:
COG0377, NuoB, NADH:ubiquinone oxidoreductase 20 kD subunit 
and related Fe-S oxidoreductases 
[Energy production and conversion]
CD-Length = 194 residues, 100.0% aligned
Score =  266 bits (682), Expect = 1e-72
Identities = 112/200 (56%), Positives = 142/200 (71%), Gaps = 7/200 (3%)
Genomic Context:
Comment:
ReferenceID:6823
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:23965
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:33225
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:3410_cdd.html
URL:
ReferenceID:34573
Author/Investigator(s): Camacho Carvajal MM, Wijfjes AH, Mulders IH, Lugtenberg BJ, Bloemberg GV.
Title: Characterization of NADH dehydrogenases of Pseudomonas fluorescens WCS365 and their role in competitive root colonization.
PubMed: 12118882
MedLine:
Source:
Mol Plant Microbe Interact. 2002 Jul;15(7):662-71.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12118882
Homologs By Global Alignment
Gene ID:3410

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
5445 PA2638_tr translation of PA2638 225 99.99 99.99 0 1195.0
151830 gb|AAG06026.1|AE004692_5 (AE004692) NADH dehydrogenase I chain B [Pseudomonas aeruginosa PAO1] 225 99.99 99.99 0 1195.0
151831 gb|AAF97798.1|AF281148_2 (AF281148) NADH dehydrogenase I subunit B [Pseudomonas fluorescens] 225 94.22 97.33 1 1133.0
151832 gb|AAN69703.1|AE016606_6 (AE016789) NADH dehydrogenase I, B subunit [Pseudomonas putida KT2440] 225 92.44 96.00 0 1130.0
151833 gb|AAO56844.1| (AE016868) NADH dehydrogenase I, B subunit [Pseudomonas syringae pv. tomato str. DC3000] 225 92.44 96.88 1 1119.0
GC ORFID: 46412How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA2638Glimmer Score:
Start: 2355223Stop: 2355900
Length: 678
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA2638 translation of PA2638Homolog Bit Score 464.0
Other Homologs: psyr_15may02_Scaffold17_revised_gene2765 (ORF: BLASTX 432.0), t_PA2638 (ORF: GLIMMER)
GC ORF Sequence
ATGCAATACAAACTTACCCGGATCGATCCCGATGCGGCCAACGACCAATACCCGATAGGCGAACGGGAAACC
GTAGCCGACCCGCTGGTCGAGGGCCAGGTTCACAAGAACATCTTCATGGGCAAGCTCGAGGATGTGCTGAAC
TCCACCGTCAACTGGGGTCGCAAGAACTCGCTCTGGCCCTATAACTTCGGGCTGTCGTGCTGCTACGTGGAG
ATGACCACCGCCTTCACCGCGCCGCACGATATCGCCCGCTTCGGCGCCGAAGTGATCCGGGCGTCGCCGCGC
CAGGCCGACTTCATGGTCATCGCCGGCACCTGCTTCATCAAGATGGCCCCGGTCATCCAGCGCCTCTACGAG
CAGATGCTCGAACCCAAGTGGGTCATCTCCATGGGCTCGTGCGCCAATTCCGGCGGCATGTACGACATCTAT
TCGGTGGTCCAGGGGGTCGACAAGTTCCTCCCCGTGGACGTCTACATCCCCGGCTGCCCGCCCCGTCCGGAG
GCGTTCCTGCAAGGCCTGATGCTGCTGCAGGAATCCATCGGCCAGGAGCGCCGCCCGTTGTCCTGGGTCGTT
GGCGACCAGGGGGTCTACCGCGCCGAAATGCCGGCCCAGAAAGACCTGAAACGCGAGCAGCGCATCCAGGTG
ACCAACCTGCGCAGCCCCGACGAAGTGTGA