ViewGene
Locus Name:
GeneID:
Location:

GeneID:3409
TrivialName: PA14_40850
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_40850
PAO1 Ortholog Locus:PA1831
Sequence Length:711
Protein Length:236
Start: 3644484
Stop: 3645194
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05220.1|AE004609_7 (AE004609) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 234/236 (99%), Positives = 236/236 (100%)
Sequence:
GTGGGCAGCATCTACCTGATTCGACATGGCCAGGCGTCGTTCGGTGCCGACGACTACGACGTGCTGTCGCCG
ACCGGCATCCGCCAGGCGGAAATCCTCGGCGACCACCTGCTAAACCTCGGCGTCCGTTTCGACCGCGTCCTC
AGCGGCGGCTTGCGCCGCCAGCAGCACACCGCCCGCGCCGCCCTCGAACGCCTGGAGTCCTCCGGGCTGGCC
ACGCCGGAGCTGGAAGTCGATCCGGCGTTCAACGAATTCGAAGCCGACGCGGTGATCCGCGCGCACCTGCCG
GACCTGCTCGAGGAGCAGCCGGAAGCCTTGCACATCCTTCGCCATGCGGCCGAGCATCGGGCCGAGTTCCAG
CGCCTGTTCTCCACCATCATCGCGCGCTGGGTTTCCGGCAACCATGAGAAAGATGGGCTGGAAAGCTGGCAG
GAATTCCTCGATAAGGTCCATGACGGTCTTCGTCGTCTGCTGGCGCAGGCCAGCGGCAAGGACAGGGTCGCC
GTGTTCACCTCCGGCGGTACCATCACCGCCCTGCTCCAGCTGATCGTCGGCGTTCCGCCGCTCAAGGCCTTC
GAGCTGAACTGGCAGATCGTCAATACCTCGCTGACTCGCCTGAAATTCCGCGGCGAGGAAGTGTCCCTGGCT
TCCTTCAACAGTCACGTGCACCTGGAACTGTTGAAGGCGCCGGAACTCATCACCTATCGATGA
Translation:
MGSIYLIRHGQASFGADDYDVLSPTGIRQAEILGDHLLNLGVRFDRVLSGGLRRQQHTARAALERLESSGLA
TPELEVDPAFNEFEADAVIRAHLPDLLEEQPEALHILRHAAEHRAEFQRLFSTIIARWVSGNHEKDGLESWQ
EFLDKVHDGLRRLLAQASGKDRVAVFTSGGTITALLQLIVGVPPLKAFELNWQIVNTSLTRLKFRGEEVSLA
SFNSHVHLELLKAPELITYR*
AnnotationID:3417GeneID:3409
AnnotatorUID: diggins
Modification Date/Time: 2005-06-02 20:08:16
Gene Name:
Confidence Code:3
GeneProduct:putative phosphoglycerate mutase
Cell Localization:()
Synonyms:gpmA
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(5) Carbon compound catabolism
Alternate Gene Product Name:putative fructose-2,6-bisphosphatase
Functional Category Confidence Code:5
COGs:COG0406
Secondary Functional Category(ies):
EC Number:5.4.2.1
Status:ACTIVE
Pathway:
Glycolysis / Gluconeogenesis
Homology:
>gb|AAN69517.1|AE016585_9 (AE016788) phosphoglycerate mutase family protein [Pseudomonas
           putida KT2440]
          Length = 236

 Score =  315 bits (808), Expect = 1e-85
 Identities = 148/236 (62%), Positives = 188/236 (79%)
Structural Features:
COG0406, GpmB, Fructose-2,6-bisphosphatase 
[Carbohydrate transport and metabolism]
CD-Length = 208 residues,  91.8% aligned
Score = 95.7 bits (237), Expect = 4e-21
Identities = 58/220 (26%), Positives = 80/220 (36%), Gaps = 36/220 (16%)
Genomic Context:






   
Comment:
other possible gene names: gpm, pgm, pgmA


















    ReferenceID:14827




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23963




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37094




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3409_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3409
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5444
                           PA1831_tr
                           translation of PA1831
                           236
                           99.15
                           99.99
                           0
                           1193.0
     

     
     
151827
                           gb|AAG05220.1|AE004609_7
                           (AE004609) hypothetical protein PA1831 [Pseudomonas aeruginosa PAO1]
                           236
                           98.72
                           99.99
                           0
                           1190.0
     

     
     
151828
                           gb|AAN69517.1|AE016585_9
                           (AE016788) phosphoglycerate mutase family protein [Pseudomonas putida KT2440]
                           236
                           62.28
                           79.66
                           0
                           804.0
     

     
     
151829
                           gb|AAO56227.1|
                           (AE016865) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           236
                           61.01
                           78.38
                           0
                           747.0
     

     






      

          
GC ORFID: 46411How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1831Glimmer Score: 

          
Start: 1309426Stop: 1308716

          
Length: 711


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1831 translation of PA1831Homolog Bit Score 464.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene114 (ORF: BLASTX 296.0), t_PA1831 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGGGCAGCATCTACCTGATTCGACATGGCCAGGCGTCGTTCGGTGCCGACGACTACGACGTGCTGTCGCCG 
ACCGGCATCCGCCAGGCGGAAATCCTCGGCGACCACCTGCTAAACCTCGGCGTCCGTTTCGACCGCGTCCTC 
AGCGGCGGCTTGCGCCGCCAGCAGCACACCGCCCGCGCCGCCCTCGAACGCCTGGAGTCCTCCGGGCTGGCC 
ACGCCGGAGCTGGAAGTCGATCCGGCGTTCAACGAATTCGAAGCCGACGCGGTGATCCGCGCGCACCTGCCG 
GACCTGCTCGAGGAGCAGCCGGAAGCCTTGCACATCCTTCGCCATGCGGCCGAGCATCGGGCCGAGTTCCAG 
CGCCTGTTCTCCACCATCATCGCGCGCTGGGTTTCCGGCAACCATGAGAAAGATGGGCTGGAAAGCTGGCAG 
GAATTCCTCGATAAGGTCCATGACGGTCTTCGTCGTCTGCTGGCGCAGGCCAGCGGCAAGGACAGGGTCGCC 
GTGTTCACCTCCGGCGGTACCATCACCGCCCTGCTCCAGCTGATCGTCGGCGTTCCGCCGCTCAAGGCCTTC 
GAGCTGAACTGGCAGATCGTCAATACCTCGCTGACTCGCCTGAAATTCCGCGGCGAGGAAGTGTCCCTGGCT 
TCCTTCAACAGTCACGTGCACCTGGAACTGTTGAAGGCGCCGGAACTCATCACCTATCGATGA