ViewGene

Locus Name:
GeneID:
Location:

GeneID:3408
TrivialName: PA14_70800
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_70800
PAO1 Ortholog Locus:PA5365
Sequence Length:729
Protein Length:242
Start: 6306034
Stop: 6305306
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08750.1|AE004948_6 (AE004948) phosphate uptake regulatory protein PhoU [Pseudomonas aeruginosa PAO1]
Identities = 241/242 (99%), Positives = 242/242 (100%)
Sequence:
ATGATCAACAAAGACAGTCTCACCCATCACATCTCCCAGCAGTTCAACGCCGAGCTGGAGGATGTGCGCAGC
CACCTCCTGGCCATGGGCGGGCTGGTGGAAAAGCAGGTCAACGACGCGGTCAACGCGCTGATCGATGCCGAC
TCCGGCCTCGCCCAGCAGGTCCGCGAGATCGACGACCAGATCAACCAGATGGAGCGCAACATCGACGAGGAG
TGCGTGCGTATCCTCGCCCGGCGTCAGCCGGCGGCCTCCGACCTGCGCCTGATCATCAGCATCTCGAAGTCG
GTGATCGACCTCGAGCGGATCGGCGACGAGGCCTCCAAGGTCGCCCGCCGCGCCATCCAGCTGTGCGAGGAA
GGCGAGTCGCCGCGCGGCTACGTCGAGGTTCGGCACATCGGCAGCCAAGTGCAGAGGATGGTGCAGGAGGCA
CTGGACGCCTTTGCCCGCTTCGATGCCGACCTGGCGCTGTCCGTGGCACAGTACGACAAGACCGTCGATCGC
GAATACAAGACCGCCCTCCGCGAGCTGGTCACCTACATGATGGAAGACCCGCGGGCGATATCCCGCGTGCTC
AACATCATCTGGGCCCTGCGCTCGCTGGAGCGCATCGGCGACCATGCGCGCAACATCGCCGAGCTGGTGATC
TACCTGGTTCGCGGCACCGACGTTCGTCACATCGGCCTGACCCGCATGAAGGAAGAGGTCGAGAACAACCGC
GGCGAGTGA
Translation:
MINKDSLTHHISQQFNAELEDVRSHLLAMGGLVEKQVNDAVNALIDADSGLAQQVREIDDQINQMERNIDEE
CVRILARRQPAASDLRLIISISKSVIDLERIGDEASKVARRAIQLCEEGESPRGYVEVRHIGSQVQRMVQEA
LDAFARFDADLALSVAQYDKTVDREYKTALRELVTYMMEDPRAISRVLNIIWALRSLERIGDHARNIAELVI
YLVRGTDVRHIGLTRMKEEVENNRGE*
AnnotationID:3416GeneID:3408
AnnotatorUID: diggins
Modification Date/Time: 2005-03-17 07:07:33
Gene Name:phoU
Confidence Code:1
GeneProduct:phosphate uptake regulatory protein PhoU
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0704,pfam01895
Secondary Functional Category(ies):membrane proteins
EC Number:
Status:ACTIVE
Pathway:
Homology:
>dbj|BAA75658.1| (AB017356) phoU [Pseudomonas putida]
          Length = 256

 Score =  423 bits (1088), Expect = e-118
 Identities = 214/237 (90%), Positives = 231/237 (97%)

>gb|AAO58902.1| (AE016876) phosphate transport system protein PhoU [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 253

 Score =  407 bits (1046), Expect = e-113
 Identities = 204/242 (84%), Positives = 229/242 (94%)

>gb|AAN54780.1|AE015618_1 (AE015618) phosphate transport system regulatory protein PhoU
           [Shewanella oneidensis MR-1]
          Length = 236

 Score =  234 bits (598), Expect = 3e-61
 Identities = 118/233 (50%), Positives = 168/233 (72%), Gaps = 1/233 (0%)
Structural Features:
COG0704, PhoU, Phosphate uptake regulator [Inorganic ion transport and metabolism]
CD-Length = 240 residues,  97.5% aligned
Score =  171 bits (433), Expect = 1e-43
Identities = 99/234 (42%), Positives = 139/234 (59%)

pfam01895, PhoU, PhoU family.
CD-Length = 88 residues, 100.0% aligned
Score = 73.4 bits (180), Expect = 2e-14
Identities = 41/89 (46%), Positives = 62/89 (69%), Gaps = 1/89 (1%)
Genomic Context:
Comment:
ReferenceID:6819
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:23961
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:34734
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:3408_cdd.html
URL:
ReferenceID:35671
Author/Investigator(s): Kato J, Sakai Y, Nikata T, Ohtake H.
Title: Cloning and characterization of a Pseudomonas aeruginosa gene involved in the negative regulation of phosphate taxis.
PubMed: 8083184
MedLine:
Source:
J Bacteriol. 1994 Sep;176(18):5874-7.
Reference Type:Journal
Data:
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=8083184
ReferenceID:35672
Author/Investigator(s): Nikata T, Sakai Y, Shibat K, Kato J, Kuroda A, Ohtake H.
Title: Molecular analysis of the phosphate-specific transport (pst) operon of Pseudomonas aeruginosa.
PubMed: 8628229
MedLine:
Source:
Mol Gen Genet. 1996 Apr 10;250(6):692-8.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=8628229
ReferenceID:35673
Author/Investigator(s): Surin BP, Rosenberg H, Cox GB.
Title: Phosphate-specific transport system of Escherichia coli: nucleotide sequence and gene-polypeptide relationships.
PubMed: 3881386
MedLine:
Source:
J Bacteriol. 1985 Jan;161(1):189-98.
Reference Type:Journal
Data:
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=3881386
Homologs By Global Alignment
Gene ID:3408

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
5443 PA5365_tr translation of PA5365 242 99.58 99.99 0 1197.0
151786 gb|AAG08750.1|AE004948_6 (AE004948) phosphate uptake regulatory protein PhoU [Pseudomonas aeruginosa PAO1] 242 99.58 99.99 0 1197.0
151787 dbj|BAA08138.1| (D45195) a negative regulator of pho regulon [Pseudomonas aeruginosa] 242 99.58 99.99 0 1197.0
151788 dbj|BAA75658.1| (AB017356) phoU [Pseudomonas putida] 256 84.76 91.40 14 1085.0
151789 gb|AAN70890.1|AE016733_2 (AE016794) phosphate transport system regulatory protein PhoU [Pseudomonas putida KT2440] 256 83.20 90.62 14 1078.0
GC ORFID: 46410How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA5365Glimmer Score:
Start: 5569723Stop: 5568995
Length: 729
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA5365 translation of PA5365Homolog Bit Score 465.0
Other Homologs: psyr_15may02_Scaffold2_revised_gene4200 (ORF: BLASTX 411.0), t_PA5365 (ORF: GLIMMER)
GC ORF Sequence
ATGATCAACAAAGACAGTCTCACCCATCACATCTCCCAGCAGTTCAACGCCGAGCTGGAGGATGTGCGCAGC
CACCTCCTGGCCATGGGCGGGCTGGTGGAAAAGCAGGTCAACGACGCGGTCAACGCGCTGATCGATGCCGAC
TCCGGCCTCGCCCAGCAGGTCCGCGAGATCGACGACCAGATCAACCAGATGGAGCGCAACATCGACGAGGAG
TGCGTGCGTATCCTCGCCCGGCGTCAGCCGGCGGCCTCCGACCTGCGCCTGATCATCAGCATCTCGAAGTCG
GTGATCGACCTCGAGCGGATCGGCGACGAGGCCTCCAAGGTCGCCCGCCGCGCCATCCAGCTGTGCGAGGAA
GGCGAGTCGCCGCGCGGCTACGTCGAGGTTCGGCACATCGGCAGCCAAGTGCAGAGGATGGTGCAGGAGGCA
CTGGACGCCTTTGCCCGCTTCGATGCCGACCTGGCGCTGTCCGTGGCACAGTACGACAAGACCGTCGATCGC
GAATACAAGACCGCCCTCCGCGAGCTGGTCACCTACATGATGGAAGACCCGCGGGCGATATCCCGCGTGCTC
AACATCATCTGGGCCCTGCGCTCGCTGGAGCGCATCGGCGACCATGCGCGCAACATCGCCGAGCTGGTGATC
TACCTGGTTCGCGGCACCGACGTTCGTCACATCGGCCTGACCCGCATGAAGGAAGAGGTCGAGAACAACCGC
GGCGAGTGA