ViewGene

Locus Name:
GeneID:
Location:

GeneID:3406
TrivialName: PA14_25030
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_25030
PAO1 Ortholog Locus:PA3018
Sequence Length:687
Protein Length:228
Start: 2189692
Stop: 2190378
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06406.1|AE004727_2 (AE004727) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 228/228 (100%), Positives = 228/228 (100%)
Sequence:
ATGGCAATCGAGTACCGCATCACGCTGGACGACCAGCATCAGCTCAACTATCGCATCGAGCTGGAGCGGCAC
TACGACCCGCAGGCGGCTGCCGCAGCGCCGCGCTGGACGCGCCTGGAACACAATCGCTGCAGCAACTGCCCG
CTCGATCGCGAACGCTACAGCCATTGTCCGGCGGCGGTCGACCTGCATGGGGTGATCGAGGATTTCCGCAAC
CTGCCGGCGTTCCGCAAGGCCGGCATCTGCGTGCGCACGCCGGAGCGCGAGTACATCAAGCAGGCGGGCCTG
GAGGAAGGACTGCGCGCGCTGATCGGCTTGATCATGGCCAGCAGCGCCTGTCCGCTGCTGGCGCCGCTGAGG
CCGATGGCCATGCAGCACCTGCCGTTCGCCAGCAACCAGGAGTTCGTGCTGCGGGTGGTGCCGCTGTACCTG
ATGCGCCAGTACTTCAACTTCCGCGAGGGGCGGCATGCCGATTGGGAACTGAAAGGGCTGGTGCGGCTGTTC
CAGCAGTTGCAACTGGTCAACCAGGCGTTCTGGCAGCGAATCCACGACACCTGTGTCAGCGATTCCAACCTG
AAGGCGTTCCTGACCTTCTTCTCGCTGTCGTCGAGCATCAGCTATTCGCTGGAAACCCAGTTGCAGAAGATC
CGCCCGCTGGTGATGAGCGCCGAGGAAACGCTCGGCTGA
Translation:
MAIEYRITLDDQHQLNYRIELERHYDPQAAAAAPRWTRLEHNRCSNCPLDRERYSHCPAAVDLHGVIEDFRN
LPAFRKAGICVRTPEREYIKQAGLEEGLRALIGLIMASSACPLLAPLRPMAMQHLPFASNQEFVLRVVPLYL
MRQYFNFREGRHADWELKGLVRLFQQLQLVNQAFWQRIHDTCVSDSNLKAFLTFFSLSSSISYSLETQLQKI
RPLVMSAEETLG*
AnnotationID:3414GeneID:3406
AnnotatorUID: diggins
Modification Date/Time: 2005-04-11 19:07:08
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA3018
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
CDD Search: No hits above 0.01 threshold.
Genomic Context:
Comment:
ReferenceID:6815
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:23957
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:3406

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
5441 PA3018_tr translation of PA3018 228 99.99 99.99 0 1196.0
151693 gb|AAG06406.1|AE004727_2 (AE004727) hypothetical protein PA3018 [Pseudomonas aeruginosa PAO1] 228 99.99 99.99 0 1196.0
GC ORFID: 46408How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA3018Glimmer Score:
Start: 2764235Stop: 2763549
Length: 687
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA3018 translation of PA3018Homolog Bit Score 465.0
Other Homologs: t_PA3018 (ORF: GLIMMER)
GC ORF Sequence
ATGGCAATCGAGTACCGCATCACGCTGGACGACCAGCATCAGCTCAACTATCGCATCGAGCTGGAGCGGCAC
TACGACCCGCAGGCGGCTGCCGCAGCGCCGCGCTGGACGCGCCTGGAACACAATCGCTGCAGCAACTGCCCG
CTCGATCGCGAACGCTACAGCCATTGTCCGGCGGCGGTCGACCTGCATGGGGTGATCGAGGATTTCCGCAAC
CTGCCGGCGTTCCGCAAGGCCGGCATCTGCGTGCGCACGCCGGAGCGCGAGTACATCAAGCAGGCGGGCCTG
GAGGAAGGACTGCGCGCGCTGATCGGCTTGATCATGGCCAGCAGCGCCTGTCCGCTGCTGGCGCCGCTGAGG
CCGATGGCCATGCAGCACCTGCCGTTCGCCAGCAACCAGGAGTTCGTGCTGCGGGTGGTGCCGCTGTACCTG
ATGCGCCAGTACTTCAACTTCCGCGAGGGGCGGCATGCCGATTGGGAACTGAAAGGGCTGGTGCGGCTGTTC
CAGCAGTTGCAACTGGTCAACCAGGCGTTCTGGCAGCGAATCCACGACACCTGTGTCAGCGATTCCAACCTG
AAGGCGTTCCTGACCTTCTTCTCGCTGTCGTCGAGCATCAGCTATTCGCTGGAAACCCAGTTGCAGAAGATC
CGCCCGCTGGTGATGAGCGCCGAGGAAACGCTCGGCTGA