ViewGene
Locus Name:
GeneID:
Location:

GeneID:3404
TrivialName: PA14_49740
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_49740
PAO1 Ortholog Locus:PA1132
Sequence Length:690
Protein Length:229
Start: 4425290
Stop: 4424601
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04521.1|AE004543_5 (AE004543) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 228/229 (99%), Positives = 228/229 (99%)
Sequence:
GTGTCGTCCTGGTTCTCCATGCGCGCCGGCGATCCGCCCAGCTTCGTCACCGGCGTGGTCGGCTTCGAGAAC
ACCGGCAGCAACGACCCGTCCACCCGCCTGACCCTGCGTTTCCGCGATCCCGTCTCCAAGACCCATGCGGCC
CACGTCACCACCTCGTCGTACTCCGAGCTGTTCAGCCTCGCACTGACGCCGCGCTACTACGAGCTTTACGAG
TTCGAGGTGAGGTACCTGTCCTATACCGTCACCCGCGAGACCGGTGCGTACGAGGAGCGCTGCGAGGCCAAC
GGCGAGGCGCTGGAGAAGACGGTCCAGAAAAGGAAGCGCAGCGTCACCCACACGGCGGTGAACGTGGAGTCC
AACTGTCGTTCTACGCCGCTGACCAAGACCGACTACTACTACGAGACCTATACCTCCAAGCCGTTCTCCGCG
CCGTTCCGTGCCGAGAGCTTCGCCACCAACTACATCGGCGACTTCCGCGTGCAGTGCAGCTACAAGGAGAAG
AAGGGCAAGACCCTCGTCGATAGCTGCCGTCTCAACTACGGCGCCGTCAGCCGCGATCGGGTGGATGCCTGG
GTGGCGCAGATGAACGAGGCAGACAAGGACAAGCGCGAGCCGCTGCCGCCGGTACGCCAGCAGGCGGTCGAC
ACGAAGAAGGCCGGCAAGCTCATCCATTCGGTATTTCGCTGA
Translation:
MSSWFSMRAGDPPSFVTGVVGFENTGSNDPSTRLTLRFRDPVSKTHAAHVTTSSYSELFSLALTPRYYELYE
FEVRYLSYTVTRETGAYEERCEANGEALEKTVQKRKRSVTHTAVNVESNCRSTPLTKTDYYYETYTSKPFSA
PFRAESFATNYIGDFRVQCSYKEKKGKTLVDSCRLNYGAVSRDRVDAWVAQMNEADKDKREPLPPVRQQAVD
TKKAGKLIHSVFR*
AnnotationID:3412GeneID:3404
AnnotatorUID: danlee
Modification Date/Time: 2004-09-08 16:04:48
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA1132
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:14825




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23953




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3404
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5439
                           PA1132_tr
                           translation of PA1132
                           229
                           99.56
                           99.56
                           0
                           1197.0
     

     
     
151655
                           gb|AAG04521.1|AE004543_5
                           (AE004543) hypothetical protein PA1132 [Pseudomonas aeruginosa PAO1]
                           229
                           99.12
                           99.56
                           0
                           1194.0
     

     






      

          
GC ORFID: 46406How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1132Glimmer Score: 

          
Start: 528618Stop: 529307

          
Length: 690


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1132 translation of PA1132Homolog Bit Score 465.0

          
Other Homologs:  t_PA1132 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGTCGTCCTGGTTCTCCATGCGCGCCGGCGATCCGCCCAGCTTCGTCACCGGCGTGGTCGGCTTCGAGAAC 
ACCGGCAGCAACGACCCGTCCACCCGCCTGACCCTGCGTTTCCGCGATCCCGTCTCCAAGACCCATGCGGCC 
CACGTCACCACCTCGTCGTACTCCGAGCTGTTCAGCCTCGCACTGACGCCGCGCTACTACGAGCTTTACGAG 
TTCGAGGTGAGGTACCTGTCCTATACCGTCACCCGCGAGACCGGTGCGTACGAGGAGCGCTGCGAGGCCAAC 
GGCGAGGCGCTGGAGAAGACGGTCCAGAAAAGGAAGCGCAGCGTCACCCACACGGCGGTGAACGTGGAGTCC 
AACTGTCGTTCTACGCCGCTGACCAAGACCGACTACTACTACGAGACCTATACCTCCAAGCCGTTCTCCGCG 
CCGTTCCGTGCCGAGAGCTTCGCCACCAACTACATCGGCGACTTCCGCGTGCAGTGCAGCTACAAGGAGAAG 
AAGGGCAAGACCCTCGTCGATAGCTGCCGTCTCAACTACGGCGCCGTCAGCCGCGATCGGGTGGATGCCTGG 
GTGGCGCAGATGAACGAGGCAGACAAGGACAAGCGCGAGCCGCTGCCGCCGGTACGCCAGCAGGCGGTCGAC 
ACGAAGAAGGCCGGCAAGCTCATCCATTCGGTATTTCGCTGA