ViewGene
Locus Name:
GeneID:
Location:

GeneID:3403
TrivialName: PA14_58960
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_58960
PAO1 Ortholog Locus:
Sequence Length:702
Protein Length:233
Start: 5254508
Stop: 5255209
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAP84235.1| (AY273869) conserved hypothetical protein [Pseudomonas aeruginosa]
Identities = 233/233 (100%), Positives = 233/233 (100%)
Sequence:
ATGGACAAGCAAAAAGTCCTCGCCAAGGTCGAGAAGCTGATGGCCCTGGCGAATGCCAAGGGGGCCACGCCG
AACGAGGCGGAAACCGCATTGCGCCAGGCCGCGATCCTGAAGCGGCAGTTCGACCTCAGCGATGCGGAGATC
TCGGCCCACACGGTGGAAACCGCGTGCGTTCCCACTCGAACCAGGCGCTCTCCTGCCCCATGGCTGCATGAA
CTGGCCGGGATCTGCGCCAGTTCCTTCGGCTGCGACTACCTGGCGGCATACGCGATGCCAGCGGGCTGGACG
TTCAAGTTCATGGGCCGAGGGATCGGCCCTGAGCTGGCCGCTCACGCCTACTCTACGCTCCACCACCAACTG
GTGGCAGCGCGCTCGGCTCATGTCGCCCAACAGAAGCGCTGCAAGCTGTCGACCAAGCGTCGTCGCAGCAAG
CTCTTCGTCGAAGGCTGGCTTCTCGCAGTGCGTTCGCTGGTACGTGAATTTGCTGGCAGGCCGGACGAGTCG
ACTCAAGCAGCCATCAAGGCCTACCTCGAACTACACCATCCGGCGTTGAAGTACCTGGAGCCGGCGGCGCTT
ACGAAGGCCCTTGCCTATGACCAGGCCTCGCTGCAAGCAGGCTGGGAGCACGGCAAAAACACTCGCCTGCAC
CGCGGTGTCAGCCGGCGAGTTCAGGGCGCGCTCGAGCAGGGAGGTTCCCAATGA
Translation:
MDKQKVLAKVEKLMALANAKGATPNEAETALRQAAILKRQFDLSDAEISAHTVETACVPTRTRRSPAPWLHE
LAGICASSFGCDYLAAYAMPAGWTFKFMGRGIGPELAAHAYSTLHHQLVAARSAHVAQQKRCKLSTKRRRSK
LFVEGWLLAVRSLVREFAGRPDESTQAAIKAYLELHHPALKYLEPAALTKALAYDQASLQAGWEHGKNTRLH
RGVSRRVQGALEQGGSQ*
AnnotationID:3411GeneID:3403
AnnotatorUID: danlee
Modification Date/Time: 2005-08-26 15:03:43
Gene Name:RL111
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
CP6 (pseudomonas aeruginosa strain C, plasmid pKLC102)






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:6809




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23951




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3403
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
151654
                           gb|AAP84235.1|
                           (AY273869) conserved hypothetical protein [Pseudomonas aeruginosa]
                           233
                           99.99
                           99.99
                           0
                           1200.0
     

     






      

          
GC ORFID: 46405How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_RL111Glimmer Score: 

          
Start: 4518187Stop: 4518888

          
Length: 702


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_RL111 233 Homolog: STY1595 / Hypothetical protein / S.enterica subsp. enterica serovar Typhi / CT18 (CAD01841) translation of RL111Homolog Bit Score 466.0

          
Other Homologs:  psyr_15may02_Scaffold10_revised_gene1567 (ORF: BLASTX 217.0), t_RL111 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGACAAGCAAAAAGTCCTCGCCAAGGTCGAGAAGCTGATGGCCCTGGCGAATGCCAAGGGGGCCACGCCG 
AACGAGGCGGAAACCGCATTGCGCCAGGCCGCGATCCTGAAGCGGCAGTTCGACCTCAGCGATGCGGAGATC 
TCGGCCCACACGGTGGAAACCGCGTGCGTTCCCACTCGAACCAGGCGCTCTCCTGCCCCATGGCTGCATGAA 
CTGGCCGGGATCTGCGCCAGTTCCTTCGGCTGCGACTACCTGGCGGCATACGCGATGCCAGCGGGCTGGACG 
TTCAAGTTCATGGGCCGAGGGATCGGCCCTGAGCTGGCCGCTCACGCCTACTCTACGCTCCACCACCAACTG 
GTGGCAGCGCGCTCGGCTCATGTCGCCCAACAGAAGCGCTGCAAGCTGTCGACCAAGCGTCGTCGCAGCAAG 
CTCTTCGTCGAAGGCTGGCTTCTCGCAGTGCGTTCGCTGGTACGTGAATTTGCTGGCAGGCCGGACGAGTCG 
ACTCAAGCAGCCATCAAGGCCTACCTCGAACTACACCATCCGGCGTTGAAGTACCTGGAGCCGGCGGCGCTT 
ACGAAGGCCCTTGCCTATGACCAGGCCTCGCTGCAAGCAGGCTGGGAGCACGGCAAAAACACTCGCCTGCAC 
CGCGGTGTCAGCCGGCGAGTTCAGGGCGCGCTCGAGCAGGGAGGTTCCCAATGA