ViewGene
Locus Name:
GeneID:
Location:

GeneID:3402
TrivialName: PA14_00860
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_00860
PAO1 Ortholog Locus:PA0073
Sequence Length:720
Protein Length:239
Start: 84648
Stop: 83929
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03463.1|AE004446_11 (AE004446) probable ATP-binding component of ABC transporter [Pseudomonas aeruginosa PAO1]
Identities = 238/239 (99%), Positives = 239/239 (100%)
Sequence:
ATGATCCTGCGCCTGCACGAGGTCGCCCGCAGCCACGGCGCCGGTCGCCAGCGCTACCGCCTGCGGGTGCCG
GCGCTGGAATTGCGCGCGGGTCGCCAGCTGGCCATCGTCGGCCCCAGCGGCTGCGGCAAGAGCACCCTGCTC
GACCTGCTGGCGCTGGCCCTGGCGCCGGACCCGGGCGGGCGCTTCGAATTCCTCGCCGGGGAACGCCCGCAG
GACATCGCCGCGCTCTGGCGCGACGGCCGCCAGGACCGCTTGGCGGCGCTGCGCCGGCAGCACTGCGGCTAC
GTGCTGCAAAGCGGCGGGTTGCTCGAGTTCCTCGATGTGCGGCGCAACATCGGACTGCCCTGCGCGTTGCTC
GGCGCCCCGTCCGCCGAGCGCGTGCAGGCGCTGGCCGAGCGGCTGGAAATCGGCGACCAGCTGGACAAGAAA
CCGGCGGCGCTGTCGGTCGGCCAGCGCCAGCGGGTCGCCATCGCCCGCGCCCTGGCGCATGCGCCGCGCCTG
TTGCTGGCCGACGAGCCGACCGCGGCGCTCGACCCGCTGAACGCCGAACGGGTGATGCGCCTGCTGGTGGAA
CAGGCCCGCGAGCGCGGCGCCTGCACCGTGGTCGCCACCCACGACGAGCGCCTGGCCCGCGCCGCCGGACTC
GAAGTCCTGGCCATCCGCTGGCAACGCGAGGCCGACGACAGCGTCGGCGCCTGCCTCGAGGACGTTGGCTGA
Translation:
MILRLHEVARSHGAGRQRYRLRVPALELRAGRQLAIVGPSGCGKSTLLDLLALALAPDPGGRFEFLAGERPQ
DIAALWRDGRQDRLAALRRQHCGYVLQSGGLLEFLDVRRNIGLPCALLGAPSAERVQALAERLEIGDQLDKK
PAALSVGQRQRVAIARALAHAPRLLLADEPTAALDPLNAERVMRLLVEQARERGACTVVATHDERLARAAGL
EVLAIRWQREADDSVGACLEDVG*
AnnotationID:3410GeneID:3402
AnnotatorUID: diggins
Modification Date/Time: 2005-03-22 17:05:13
Gene Name:
Confidence Code:3
GeneProduct:putative ATP-binding component of ABC transporter
Cell Localization:()
Synonyms:PA0073
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1136
Secondary Functional Category(ies):adaptation, protection
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO56371.1| (AE016866) ABC transporter, ATP-binding protein [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 230

 Score =  165 bits (417), Expect = 2e-40
 Identities = 99/216 (45%), Positives = 133/216 (61%), Gaps = 5/216 (2%)








 
Structural Features:
COG1136, SalX, ABC-type antimicrobial peptide transport system, 
ATPase component 
[Defense mechanisms] 
CD-Length = 226 residues,  92.5% aligned
Score =  195 bits (498), Expect = 4e-51
Identities = 91/218 (41%), Positives = 127/218 (58%), Gaps = 14/218 (6%)






   
Genomic Context:






   
Comment:


















    ReferenceID:6807




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23949




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33427




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3402_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3402
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5435
                           PA0073_tr
                           translation of PA0073
                           239
                           99.58
                           99.99
                           0
                           1198.0
     

     
     
151588
                           gb|AAG03463.1|AE004446_11
                           (AE004446) probable ATP-binding component of ABC transporter [Pseudomonas aeruginosa PAO1]
                           239
                           99.58
                           99.99
                           0
                           1198.0
     

     
     
151589
                           gb|AAO56371.1|
                           (AE016866) ABC transporter, ATP-binding protein [Pseudomonas syringae pv. tomato str. DC3000]
                           243
                           40.74
                           57.20
                           17
                           415.0
     

     
     
151591
                           gb|AAG07982.1|AE004873_4
                           (AE004873) probable ATP-binding component of ABC transporter [Pseudomonas aeruginosa PAO1]
                           244
                           39.75
                           53.68
                           21
                           354.0
     

     
     
5436
                           PA4594_tr
                           translation of PA4594
                           244
                           39.75
                           53.68
                           21
                           355.0
     

     






      

          
GC ORFID: 46404How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0073Glimmer Score: 

          
Start: 5885985Stop: 5885266

          
Length: 720


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0073 translation of PA0073Homolog Bit Score 466.0

          
Other Homologs:  psyr_15may02_Scaffold13_revised_gene2121 (ORF: BLASTX 168.0), t_PA4594 (ORF: BLASTX 135.0), t_PA2857 (ORF: BLASTX 134.0), psyr_15may02_Scaffold1_revised_gene1332 (ORF: BLASTX 114.0), psyr_15may02_Scaffold1_revised_gene899 (ORF: BLASTX 108.0), t_PA0073 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGATCCTGCGCCTGCACGAGGTCGCCCGCAGCCACGGCGCCGGTCGCCAGCGCTACCGCCTGCGGGTGCCG 
GCGCTGGAATTGCGCGCGGGTCGCCAGCTGGCCATCGTCGGCCCCAGCGGCTGCGGCAAGAGCACCCTGCTC 
GACCTGCTGGCGCTGGCCCTGGCGCCGGACCCGGGCGGGCGCTTCGAATTCCTCGCCGGGGAACGCCCGCAG 
GACATCGCCGCGCTCTGGCGCGACGGCCGCCAGGACCGCTTGGCGGCGCTGCGCCGGCAGCACTGCGGCTAC 
GTGCTGCAAAGCGGCGGGTTGCTCGAGTTCCTCGATGTGCGGCGCAACATCGGACTGCCCTGCGCGTTGCTC 
GGCGCCCCGTCCGCCGAGCGCGTGCAGGCGCTGGCCGAGCGGCTGGAAATCGGCGACCAGCTGGACAAGAAA 
CCGGCGGCGCTGTCGGTCGGCCAGCGCCAGCGGGTCGCCATCGCCCGCGCCCTGGCGCATGCGCCGCGCCTG 
TTGCTGGCCGACGAGCCGACCGCGGCGCTCGACCCGCTGAACGCCGAACGGGTGATGCGCCTGCTGGTGGAA 
CAGGCCCGCGAGCGCGGCGCCTGCACCGTGGTCGCCACCCACGACGAGCGCCTGGCCCGCGCCGCCGGACTC 
GAAGTCCTGGCCATCCGCTGGCAACGCGAGGCCGACGACAGCGTCGGCGCCTGCCTCGAGGACGTTGGCTGA