ViewGene
Locus Name:
GeneID:
Location:

GeneID:3401
TrivialName: PA14_56930
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_56930
PAO1 Ortholog Locus:PA4379
Sequence Length:684
Protein Length:227
Start: 5074343
Stop: 5073660
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07767.1|AE004854_3 (AE004854) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 227/227 (100%), Positives = 227/227 (100%)
Sequence:
ATGAACAATCCGCCTGTCGACCTCGACTTTTCTCACAAGTATGATCGCGAGCATGCTGAGGCCTACCTGAAG
AAGCATCAGGACGGCCTCGCCCGGAAACTTTCCCACCGGCGCGACGTCCAACTCGCCCGGCACGCGCTGAAG
CTCGCGGGGCAGCCCAACCTGGTGCTCGACCTGCCCTGCGGCGCCGGACGCTTCTGGCCGCTGCTGGCGGAA
AAGGACAACCGGGTGATCATCGGCGCCGACAATTCCGCGGACATGCTGGCGGTCGCCTGCGCCGGTCAGCCG
GACGGTGTGGTGAAACGGGTACGGCCCTTGCAGACTTCCGCTTTCGCCATCGACCTGCCGGACAGCTCGGTG
GACAATATCTTCTGCATGCGGCTGCTCCACCACATCGGCGAGGCGGACGATCGACGCGTCTTGCTCCGCGAG
TTTCACCGGGTCACGCGGGACAGCGTGATTCTTTCCCTCTGGGTCGATGGCAATTTCAAGGCCTGGAAGCGT
AGGCGCATGGAGGCACGGCGGGTAGCGAACGGGGAACAGACCGGCTACCAGAACCGCTTCGTGTTACCAGCC
GAAACGGTCGAGCGCGAGTTCCGCGACGCCGGCTTCGTCGTCCAGAAGCATCTCGATTTCATCCCGCTGTAT
CACATGTGGCGGGTCTATATCTTGCGAAAGGAATAA
Translation:
MNNPPVDLDFSHKYDREHAEAYLKKHQDGLARKLSHRRDVQLARHALKLAGQPNLVLDLPCGAGRFWPLLAE
KDNRVIIGADNSADMLAVACAGQPDGVVKRVRPLQTSAFAIDLPDSSVDNIFCMRLLHHIGEADDRRVLLRE
FHRVTRDSVILSLWVDGNFKAWKRRRMEARRVANGEQTGYQNRFVLPAETVEREFRDAGFVVQKHLDFIPLY
HMWRVYILRKE*
AnnotationID:3409GeneID:3401
AnnotatorUID: diggins
Modification Date/Time: 2005-05-02 08:08:16
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA4379
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:6805




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3401_cdd.html


    		




 
URL:

















    ReferenceID:23947




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3401
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5434
                           PA4379_tr
                           translation of PA4379
                           227
                           99.99
                           99.99
                           0
                           1200.0
     

     
     
151583
                           gb|AAG07767.1|AE004854_3
                           (AE004854) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           227
                           99.99
                           99.99
                           0
                           1200.0
     

     
     
151584
                           gb|AAN66528.1|AE016281_9
                           (AE016777) conserved hypothetical protein [Pseudomonas putida KT2440]
                           227
                           71.36
                           81.49
                           1
                           869.0
     

     
     
151585
                           gb|AAO57822.1|
                           (AE016871) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           227
                           68.72
                           79.73
                           1
                           846.0
     

     
     
151587
                           emb|CAA70933.1|
                           (Y09798) hypothetical protein [Pseudomonas fluorescens]
                           227
                           66.96
                           75.33
                           5
                           776.0
     

     






      

          
GC ORFID: 46403How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4379Glimmer Score: 

          
Start: 4338019Stop: 4337336

          
Length: 684


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA4379 translation of PA4379Homolog Bit Score 466.0

          
Other Homologs:  psyr_15may02_Scaffold12_revised_gene2059 (ORF: BLASTX 332.0), t_PA4379 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAACAATCCGCCTGTCGACCTCGACTTTTCTCACAAGTATGATCGCGAGCATGCTGAGGCCTACCTGAAG 
AAGCATCAGGACGGCCTCGCCCGGAAACTTTCCCACCGGCGCGACGTCCAACTCGCCCGGCACGCGCTGAAG 
CTCGCGGGGCAGCCCAACCTGGTGCTCGACCTGCCCTGCGGCGCCGGACGCTTCTGGCCGCTGCTGGCGGAA 
AAGGACAACCGGGTGATCATCGGCGCCGACAATTCCGCGGACATGCTGGCGGTCGCCTGCGCCGGTCAGCCG 
GACGGTGTGGTGAAACGGGTACGGCCCTTGCAGACTTCCGCTTTCGCCATCGACCTGCCGGACAGCTCGGTG 
GACAATATCTTCTGCATGCGGCTGCTCCACCACATCGGCGAGGCGGACGATCGACGCGTCTTGCTCCGCGAG 
TTTCACCGGGTCACGCGGGACAGCGTGATTCTTTCCCTCTGGGTCGATGGCAATTTCAAGGCCTGGAAGCGT 
AGGCGCATGGAGGCACGGCGGGTAGCGAACGGGGAACAGACCGGCTACCAGAACCGCTTCGTGTTACCAGCC 
GAAACGGTCGAGCGCGAGTTCCGCGACGCCGGCTTCGTCGTCCAGAAGCATCTCGATTTCATCCCGCTGTAT 
CACATGTGGCGGGTCTATATCTTGCGAAAGGAATAA