ViewGene
Locus Name:
GeneID:
Location:

GeneID:3400
TrivialName: PA14_45380
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_45380
PAO1 Ortholog Locus:PA1475
Sequence Length:702
Protein Length:233
Start: 4042636
Stop: 4041935
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04864.1|AE004576_13 (AE004576) heme exporter protein CcmA [Pseudomonas aeruginosa PAO1]
Identities = 232/233 (99%), Positives = 232/233 (99%)
Sequence:
ATGTCCGATCCTGCTGAAGTCCCCACAGCCAGCCCCTTGCTGGAAACCGTCGGGCTCGCCTGCGAGCGCGAC
TGGCGCATGCTGTTCGAGCGCCTCGACCTGCGCCTGGCCGCCGGCGAGATGTTGCAGGTGGTGGGTCCCAAC
GGCAGCGGCAAGACCAGCCTGCTGCGCCTGCTGTCCGGACTGATGCAGCCGACCGCCGGGGAAGTCCGCCTG
AACGGCCGGCCGCTCGCCGAACAGCGCGGCGAACTGGCCCGCAGCCTGCTGTGGATCGGCCACGCCGCGGGA
ATCAAGGGCCTGCTCAGCGCCGAGGAGAACCTCACCTGGCTCTGCGCGCTGCACCAGCCGGCCAGCCGCGAG
GCGATCTGGCAGGCCCTGGCCGACGTCGGCCTGCGTGGCTTCGAGGACGTTCCCTGCCACACCCTTTCCGCC
GGCCAGCAACGCCGCGTGGCGCTGGCCCGCCTGTACCTGGACGCACCGCCCTTGTGGATCCTCGATGAACCC
TTCACCGCCCTCGACAAACAGGGGGTGGCGCAACTGGAAGCGCACCTGGCCGGGCATTGCCAGCGCGGCGGG
ATGGTGGTGCTGACCACCCACCACAGCCTGCAGCAGGTGCCCGCCGGCTACCGCGAGCTGGACCTCGGTGCG
CTCAAGGCGGCCAGCGGCGCGACGGTCGAGCCGGCGCTGGGCGATCCGGCATGA
Translation:
MSDPAEVPTASPLLETVGLACERDWRMLFERLDLRLAAGEMLQVVGPNGSGKTSLLRLLSGLMQPTAGEVRL
NGRPLAEQRGELARSLLWIGHAAGIKGLLSAEENLTWLCALHQPASREAIWQALADVGLRGFEDVPCHTLSA
GQQRRVALARLYLDAPPLWILDEPFTALDKQGVAQLEAHLAGHCQRGGMVVLTTHHSLQQVPAGYRELDLGA
LKAASGATVEPALGDPA*
AnnotationID:3408GeneID:3400
AnnotatorUID: danlee
Modification Date/Time: 2004-02-04 16:04:53
Gene Name:ccmA
Confidence Code:2
GeneProduct:heme exporter protein CcmA
Cell Localization:()
Synonyms:cycV, helA
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG4133
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:6803




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17010




  
Author/Investigator(s):
        





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:
NCBI - Conserved Domain Search.






    
Reference Type:Blast (text/plain)







    
Data:PA1475_CDS.cgi


    		




 
URL:

















    ReferenceID:23945




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3400
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5433
                           PA1475_tr
                           translation of PA1475
                           233
                           99.57
                           99.57
                           0
                           1200.0
     

     
     
151545
                           gb|AAG04864.1|AE004576_13
                           (AE004576) heme exporter protein CcmA [Pseudomonas aeruginosa PAO1]
                           233
                           99.57
                           99.57
                           0
                           1200.0
     

     
     
151546
                           gb|AAN69906.1|AE016629_8
                           (AE016790) heme ABC export system, ATP-binding protein CcmA [Pseudomonas putida KT2440]
                           233
                           70.38
                           78.96
                           23
                           868.0
     

     
     
151547
                           gb|AAO57106.1|
                           (AE016869) heme exporter protein CcmA [Pseudomonas syringae pv. tomato str. DC3000]
                           233
                           63.09
                           71.67
                           21
                           762.0
     

     
     
151548
                           gb|AAC63581.1|
                           (U85716) CCMA [Pseudomonas putida GB-1]
                           233
                           53.64
                           59.22
                           57
                           606.0
     

     






      

          
GC ORFID: 46402How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1475Glimmer Score: 

          
Start: 911273Stop: 911974

          
Length: 702


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1475 translation of PA1475Homolog Bit Score 466.0

          
Other Homologs:  psyr_15may02_Scaffold13_revised_gene2225 (ORF: BLASTX 287.0), t_PA1475 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCCGATCCTGCTGAAGTCCCCACAGCCAGCCCCTTGCTGGAAACCGTCGGGCTCGCCTGCGAGCGCGAC 
TGGCGCATGCTGTTCGAGCGCCTCGACCTGCGCCTGGCCGCCGGCGAGATGTTGCAGGTGGTGGGTCCCAAC 
GGCAGCGGCAAGACCAGCCTGCTGCGCCTGCTGTCCGGACTGATGCAGCCGACCGCCGGGGAAGTCCGCCTG 
AACGGCCGGCCGCTCGCCGAACAGCGCGGCGAACTGGCCCGCAGCCTGCTGTGGATCGGCCACGCCGCGGGA 
ATCAAGGGCCTGCTCAGCGCCGAGGAGAACCTCACCTGGCTCTGCGCGCTGCACCAGCCGGCCAGCCGCGAG 
GCGATCTGGCAGGCCCTGGCCGACGTCGGCCTGCGTGGCTTCGAGGACGTTCCCTGCCACACCCTTTCCGCC 
GGCCAGCAACGCCGCGTGGCGCTGGCCCGCCTGTACCTGGACGCACCGCCCTTGTGGATCCTCGATGAACCC 
TTCACCGCCCTCGACAAACAGGGGGTGGCGCAACTGGAAGCGCACCTGGCCGGGCATTGCCAGCGCGGCGGG 
ATGGTGGTGCTGACCACCCACCACAGCCTGCAGCAGGTGCCCGCCGGCTACCGCGAGCTGGACCTCGGTGCG 
CTCAAGGCGGCCAGCGGCGCGACGGTCGAGCCGGCGCTGGGCGATCCGGCATGA