ViewGene

Locus Name:
GeneID:
Location:

GeneID: 34

TrivialName: PA14_24490

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_24490

PAO1 Ortholog Locus: PA3063

Sequence Length: 3582

Protein Length: 1193

Start: 2138292

Stop: 2141873

Strand: +

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG06451.1|AE004730_15 (AE004730) hypothetical protein [Pseudomonas aeruginosa PAO1] Identities = 1179/1193 (98%), Positives = 1187/1193 (99%)

Sequence:

ATGGCCAACTCGTCTGCCGCTGACAAGCATCCCCAGGCGCGCCTGCTGAATCCCTGGGCCCTGCTGCCGGTC
GCTCTCGGGGTGGCGCTGGTGCTGTGGCTGACCTTCAACAGCGAAGAGGTATTCATGCCCAGCGGCGATGGC
GAGCCCGACGCGGTCTCGGTGAACTACGCCGAACTGCTGTTGCAGGCGCACCCGGAGAACGACGCGCTGCGC
CTGACCCTGATCGACCTGCTGGTCAAGCTCGGCGACTTCGAGCAGGCGCGTCATCACCTCGCCCGTCTGCGC
GGCAAGGACCGCCTGGCAACGCCGTTCTACGAGGTGGAACTGGACATCCTTGGCGCCCTGGCCAGGCCCGAG
GGCATGGATGAGGAGCAGACGCGCCGATTGCTGGAGCGCCTGCGCAAGATCGAGCATGTTTCGTTGAACGAC
GCCATGCTCGAACGACTTGCCCGTCATGCCCTGGCCCTGGACGCGCCGGACCTGGCGGCGCGGACCTTTGCC
GAACTGGCCGGCCGCGACCCGCAGGGCCGGCAGCGCTGGCTGGACGAGGCGGCGCGCTGGTACCTGGCTTCC
GGCGAGCCGCTGCCGGCGGCGGACATCCAGCGGCAACTGGCCGAAGCGCAAACCGAGCCGGCGAAGCGCCTG
GCCTATCTGCGCCAGGCCTTCGCCAGTCTGCTCGCTGGCGAGCGCGGCGAACAGGCGGCGTTGTTGCTGGAC
GAGCGGCTGGACGCCTTGCCGGAGGATGAGTCAACCCTGGCCTGGCTCGCCGAGGGCGTACGCGCCGCCGAA
GGCAGCCAGCGCTACGACCTGGCCGAACGCTTCATCCGGCGCTGGCGCGAATTGCGCCCCGAGGACCATGAG
GCGCTGGCCGCCGACCTGCGCCTGAACATGGCCGCCGGGCGGATCGAGCGGGCCTGGGAGGTCGGCCGGGAG
CTGCTGGCCCTGCGCCCGGAGGACAGGACGCTGCTGGCCGATCTCGCGCGCCTTGGCGAATGGACCGGCAAC
GGCCCGCAGGCCCTGGGCCTGTGGAAGCAACTGCTGGCCGGCGCCGATGACCCGGCCCTGCGCGAGCATGCC
TGGCGCCTGTCGCTGCAGATGTTCGATTTCGACAGCGCCATCGAGCTGCTGGCGCCCATCGGTGCGCAGCGA
CAGATGACCGACGAGGAACTCGATGCGCTGGTCTACAGCCATGAAACCCGCGGCACGCCGGAAGAGGGCGAG
GCATGGCTGCGCGGCTACGTGCAGGTTTATCCGAAACAGCGCCTGGCCTGGCAGCGCTTGCAGCAGATCCTC
GAACACACCCAGCAGTTGCAGGAAGAGACCGGGGTCTGGGCGCGGATGGCCCGGCATTTCCCGCTGAGCGTC
AAGGAACGCATGCAGTGGGCGGAAACCCACTGGAACCTGTTCGATCCGCGCCAGGCCTGGAAGGTCCTCGCC
GGCGTGGATACCCGCGCGATCCGCGAGCCGGAGTTCTGGCGCCTGCGCGCGGCGCTGGCCTGGGCCCTGGAG
CAGGACGACGATGCCCGCGCCGCCTACGAGCGCATGCTGGCCCTGGACATCCGCCTGAACAGCAGCGACGAG
GACCAGTTGATCGCCCTGTACCGGGACAGCAATCCGCAGCAGGCCTTGCAGGTGCTTATCGGCAGTTGGCAG
CGCAGCCGCGATCCGCGGCGCCTGGCCAGCGCCCTGCAACTGGCGGAGAACCTCCACGACTGGCCGGCCCTG
AAGAGCCTGCTGGCCGAGGCCGAAGGCCTGCCGGAAGCGCAGGGCAGCCCCTATTACTGGGTGGCCAGGGCG
CGGTTGGCGGAACAGGAAGGCCATGGCGACGTCGCCGAGCGCCTGTACCGGGAAGCCCTGGTGCGTTTCCCC
GGCGAGAACCTGGTGCGCGAACGCCTGCTCTGGTTCTACATCGACCGTGGCCGTCGCGACAGCCTGGCGCCC
CTGTTGGCGCAGTGGCATGGCCTGGCGCTGCGGGACAGCACGCTGTGGCTGCCGTTCGCCAGCGCCAGCCTG
CTGCTCGAGCGTAACGATCAGGCGCTGGCCTGGTTCCGCCTGTACCTCAAGTCCAATCCCAACGACTGGCTG
GTGCAGGCCGCCTACGCCGACGCGCTGGATGCCAGCGGCTACCAGGACAAGGCCCTGCGCCTGCGCCGGCAA
CTGCTCCGGCGGCTCGACCGCGAGGCGGTCAGGGCCACCCCGGACAGCTTCGCCGCCTACCTGCGCCTGCTC
GCCGTGGCCCAGGGGCCGCTGCTCGCCCAGGGCGAGGCGCGGCGGGCCTGGAATGGCGAGCCGGCGATGCTG
CAGCTGTGGTTCGAGCAGTTCCTCGACCAGCTCGCCGCCACCAACCAGGAGCCGCTGAAGGATGACTGGCTG
GCCTGGGCGCGCGGCCGGGGCCTGAAGATCGGGCGCAACGAAGAGATCCAGGCCGCCCTGCGCAGCCAGAAT
CGCGCCGCCCTGCAACGCCTGCTGGAGCGCGACGAGCTGGATCCGGCGCAGCGGGTCGAGGCGCTGGTGCGT
CTCGGCCATGGCGGCGAAGCGCTGGGCGAGGCCCTGGGCGCACTGGGCGACGGCCACTCGCGCGACAACCGC
GAGCAGCTGCGGCGGCAGGCGGCGGAAATCCTCGAACGCACGCCCCAGGGCCTGCAACTGGGTTGGAACAAG
CGCGACTTCGGCGGTCTCGACTTCAAGGGGCCGACGCTGCGCGCGGCGCGCCACCTCGGCGACGACTGGTAC
GCCGATCTCGAACTGGGCAGTGGCCGCTATCACGGCGATGCGCTGGATAGCTCGCTCCTCGGTAGCGAACGC
AACGCCAGGCTGACGTTGCGGCGCGAACTGGCCGATGGCTTCGCCGCGGCGACGCTCGATGGCAGTTGGCGC
GACGACGAGGACCGCCACGGCCTGGGCCTGCTGCGCAACTGGCGGCTGAGTGCGCGCGACGAACTGGAAGCG
GGCCTCGACTGGCACCGCGAGACCGACGAGACCGGCCTGATGCGCGCCCTCGGCATGCGCGACAGCCTACGG
CTCGGCGGCCGCCACACCCTCAGCGGGCGCGACCAGTTGAGCTGGTCGCTGGCGCACAACCGCTTCTCCACC
CGCCAGGGCGACGACCTCGGCAACGGCGAGGCGCTGTCCCTGGAGTGGGCCCACACACTGTTCTTCGATGGC
CCGGCCTGGCAACTGCGCGGCGGCATCGACTACCAGCGCAATCGCCTGGAGAACCGCGTGCCGGACGACCTG
CTGGCGGCCCATGGCGGTGCGCTGGCGCTCGATGGCGCGCGCAGCCAGGACCTGCTGCAGGACCGCTACGGC
CAGGTCTACCTCGGCAGCACCTGGCGCCGTGGCTTCCCTGGCGCGCTGAACCGCAGCCGTCCGCAATACACC
TGGATCGTCGACACCCTGGCCGGCTGGCAGTGGACAGAGAAGGAGTTCAACTACGGCATCGATCTCGGCATC
GGCATGGAGCTGCTGGGCGATGACGAACTGGCGTTCACCTTCGGCTACCAGTCGGCTCCCCAGGGCGGCGGC
GGCGATGCCGGCGGCACGCTCGGGGTGACCTACAGCACGCGCTTCGGCCGCTGA

Translation:

MANSSAADKHPQARLLNPWALLPVALGVALVLWLTFNSEEVFMPSGDGEPDAVSVNYAELLLQAHPENDALR
LTLIDLLVKLGDFEQARHHLARLRGKDRLATPFYEVELDILGALARPEGMDEEQTRRLLERLRKIEHVSLND
AMLERLARHALALDAPDLAARTFAELAGRDPQGRQRWLDEAARWYLASGEPLPAADIQRQLAEAQTEPAKRL
AYLRQAFASLLAGERGEQAALLLDERLDALPEDESTLAWLAEGVRAAEGSQRYDLAERFIRRWRELRPEDHE
ALAADLRLNMAAGRIERAWEVGRELLALRPEDRTLLADLARLGEWTGNGPQALGLWKQLLAGADDPALREHA
WRLSLQMFDFDSAIELLAPIGAQRQMTDEELDALVYSHETRGTPEEGEAWLRGYVQVYPKQRLAWQRLQQIL
EHTQQLQEETGVWARMARHFPLSVKERMQWAETHWNLFDPRQAWKVLAGVDTRAIREPEFWRLRAALAWALE
QDDDARAAYERMLALDIRLNSSDEDQLIALYRDSNPQQALQVLIGSWQRSRDPRRLASALQLAENLHDWPAL
KSLLAEAEGLPEAQGSPYYWVARARLAEQEGHGDVAERLYREALVRFPGENLVRERLLWFYIDRGRRDSLAP
LLAQWHGLALRDSTLWLPFASASLLLERNDQALAWFRLYLKSNPNDWLVQAAYADALDASGYQDKALRLRRQ
LLRRLDREAVRATPDSFAAYLRLLAVAQGPLLAQGEARRAWNGEPAMLQLWFEQFLDQLAATNQEPLKDDWL
AWARGRGLKIGRNEEIQAALRSQNRAALQRLLERDELDPAQRVEALVRLGHGGEALGEALGALGDGHSRDNR
EQLRRQAAEILERTPQGLQLGWNKRDFGGLDFKGPTLRAARHLGDDWYADLELGSGRYHGDALDSSLLGSER
NARLTLRRELADGFAAATLDGSWRDDEDRHGLGLLRNWRLSARDELEAGLDWHRETDETGLMRALGMRDSLR
LGGRHTLSGRDQLSWSLAHNRFSTRQGDDLGNGEALSLEWAHTLFFDGPAWQLRGGIDYQRNRLENRVPDDL
LAAHGGALALDGARSQDLLQDRYGQVYLGSTWRRGFPGALNRSRPQYTWIVDTLAGWQWTEKEFNYGIDLGI
GMELLGDDELAFTFGYQSAPQGGGGDAGGTLGVTYSTRFGR*

AnnotationID:44 GeneID:34

AnnotatorUID: danlee

Modification Date/Time: 2006-02-02 12:12:37

Gene Name: pelB

Confidence Code: 4

GeneProduct: conserved hypothetical protein

Cell Localization: ()

Synonyms: PA3063

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

CDD Search: No hits above 0.01 threshold.

Genomic Context:

Part of pelABCDEFG cluster involved in biofilm matrix formation in P. aeruginosa PA14 and ZK2870

Comment:

ReferenceID:71

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:17213

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

Homologs By Global Alignment

Gene ID:34

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

70 PA3063_tr translation of PA3063 1193 98.82 99.49 0 6168.0

11333 gb|AAG06451.1|AE004730_15 (AE004730) hypothetical protein PA3063 [Pseudomonas aeruginosa PAO1] 1193 98.82 99.49 0 6168.0

GC ORFID: `43036`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA3063`	Glimmer Score:
Start: `2815637`	Stop: `2812056`
Length: `3582`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog: `t_PA3063 translation of PA3063`	Homolog Bit Score `2380.0`
Other Homologs: `t_PA3063 (ORF: GLIMMER)`
GC ORF Sequence
ATGGCCAACTCGTCTGCCGCTGACAAGCATCCCCAGGCGCGCCTGCTGAATCCCTGGGCCCTGCTGCCGGTC GCTCTCGGGGTGGCGCTGGTGCTGTGGCTGACCTTCAACAGCGAAGAGGTATTCATGCCCAGCGGCGATGGC GAGCCCGACGCGGTCTCGGTGAACTACGCCGAACTGCTGTTGCAGGCGCACCCGGAGAACGACGCGCTGCGC CTGACCCTGATCGACCTGCTGGTCAAGCTCGGCGACTTCGAGCAGGCGCGTCATCACCTCGCCCGTCTGCGC GGCAAGGACCGCCTGGCAACGCCGTTCTACGAGGTGGAACTGGACATCCTTGGCGCCCTGGCCAGGCCCGAG GGCATGGATGAGGAGCAGACGCGCCGATTGCTGGAGCGCCTGCGCAAGATCGAGCATGTTTCGTTGAACGAC GCCATGCTCGAACGACTTGCCCGTCATGCCCTGGCCCTGGACGCGCCGGACCTGGCGGCGCGGACCTTTGCC GAACTGGCCGGCCGCGACCCGCAGGGCCGGCAGCGCTGGCTGGACGAGGCGGCGCGCTGGTACCTGGCTTCC GGCGAGCCGCTGCCGGCGGCGGACATCCAGCGGCAACTGGCCGAAGCGCAAACCGAGCCGGCGAAGCGCCTG GCCTATCTGCGCCAGGCCTTCGCCAGTCTGCTCGCTGGCGAGCGCGGCGAACAGGCGGCGTTGTTGCTGGAC GAGCGGCTGGACGCCTTGCCGGAGGATGAGTCAACCCTGGCCTGGCTCGCCGAGGGCGTACGCGCCGCCGAA GGCAGCCAGCGCTACGACCTGGCCGAACGCTTCATCCGGCGCTGGCGCGAATTGCGCCCCGAGGACCATGAG GCGCTGGCCGCCGACCTGCGCCTGAACATGGCCGCCGGGCGGATCGAGCGGGCCTGGGAGGTCGGCCGGGAG CTGCTGGCCCTGCGCCCGGAGGACAGGACGCTGCTGGCCGATCTCGCGCGCCTTGGCGAATGGACCGGCAAC GGCCCGCAGGCCCTGGGCCTGTGGAAGCAACTGCTGGCCGGCGCCGATGACCCGGCCCTGCGCGAGCATGCC TGGCGCCTGTCGCTGCAGATGTTCGATTTCGACAGCGCCATCGAGCTGCTGGCGCCCATCGGTGCGCAGCGA CAGATGACCGACGAGGAACTCGATGCGCTGGTCTACAGCCATGAAACCCGCGGCACGCCGGAAGAGGGCGAG GCATGGCTGCGCGGCTACGTGCAGGTTTATCCGAAACAGCGCCTGGCCTGGCAGCGCTTGCAGCAGATCCTC GAACACACCCAGCAGTTGCAGGAAGAGACCGGGGTCTGGGCGCGGATGGCCCGGCATTTCCCGCTGAGCGTC AAGGAACGCATGCAGTGGGCGGAAACCCACTGGAACCTGTTCGATCCGCGCCAGGCCTGGAAGGTCCTCGCC GGCGTGGATACCCGCGCGATCCGCGAGCCGGAGTTCTGGCGCCTGCGCGCGGCGCTGGCCTGGGCCCTGGAG CAGGACGACGATGCCCGCGCCGCCTACGAGCGCATGCTGGCCCTGGACATCCGCCTGAACAGCAGCGACGAG GACCAGTTGATCGCCCTGTACCGGGACAGCAATCCGCAGCAGGCCTTGCAGGTGCTTATCGGCAGTTGGCAG CGCAGCCGCGATCCGCGGCGCCTGGCCAGCGCCCTGCAACTGGCGGAGAACCTCCACGACTGGCCGGCCCTG AAGAGCCTGCTGGCCGAGGCCGAAGGCCTGCCGGAAGCGCAGGGCAGCCCCTATTACTGGGTGGCCAGGGCG CGGTTGGCGGAACAGGAAGGCCATGGCGACGTCGCCGAGCGCCTGTACCGGGAAGCCCTGGTGCGTTTCCCC GGCGAGAACCTGGTGCGCGAACGCCTGCTCTGGTTCTACATCGACCGTGGCCGTCGCGACAGCCTGGCGCCC CTGTTGGCGCAGTGGCATGGCCTGGCGCTGCGGGACAGCACGCTGTGGCTGCCGTTCGCCAGCGCCAGCCTG CTGCTCGAGCGTAACGATCAGGCGCTGGCCTGGTTCCGCCTGTACCTCAAGTCCAATCCCAACGACTGGCTG GTGCAGGCCGCCTACGCCGACGCGCTGGATGCCAGCGGCTACCAGGACAAGGCCCTGCGCCTGCGCCGGCAA CTGCTCCGGCGGCTCGACCGCGAGGCGGTCAGGGCCACCCCGGACAGCTTCGCCGCCTACCTGCGCCTGCTC GCCGTGGCCCAGGGGCCGCTGCTCGCCCAGGGCGAGGCGCGGCGGGCCTGGAATGGCGAGCCGGCGATGCTG CAGCTGTGGTTCGAGCAGTTCCTCGACCAGCTCGCCGCCACCAACCAGGAGCCGCTGAAGGATGACTGGCTG GCCTGGGCGCGCGGCCGGGGCCTGAAGATCGGGCGCAACGAAGAGATCCAGGCCGCCCTGCGCAGCCAGAAT CGCGCCGCCCTGCAACGCCTGCTGGAGCGCGACGAGCTGGATCCGGCGCAGCGGGTCGAGGCGCTGGTGCGT CTCGGCCATGGCGGCGAAGCGCTGGGCGAGGCCCTGGGCGCACTGGGCGACGGCCACTCGCGCGACAACCGC GAGCAGCTGCGGCGGCAGGCGGCGGAAATCCTCGAACGCACGCCCCAGGGCCTGCAACTGGGTTGGAACAAG CGCGACTTCGGCGGTCTCGACTTCAAGGGGCCGACGCTGCGCGCGGCGCGCCACCTCGGCGACGACTGGTAC GCCGATCTCGAACTGGGCAGTGGCCGCTATCACGGCGATGCGCTGGATAGCTCGCTCCTCGGTAGCGAACGC AACGCCAGGCTGACGTTGCGGCGCGAACTGGCCGATGGCTTCGCCGCGGCGACGCTCGATGGCAGTTGGCGC GACGACGAGGACCGCCACGGCCTGGGCCTGCTGCGCAACTGGCGGCTGAGTGCGCGCGACGAACTGGAAGCG GGCCTCGACTGGCACCGCGAGACCGACGAGACCGGCCTGATGCGCGCCCTCGGCATGCGCGACAGCCTACGG CTCGGCGGCCGCCACACCCTCAGCGGGCGCGACCAGTTGAGCTGGTCGCTGGCGCACAACCGCTTCTCCACC CGCCAGGGCGACGACCTCGGCAACGGCGAGGCGCTGTCCCTGGAGTGGGCCCACACACTGTTCTTCGATGGC CCGGCCTGGCAACTGCGCGGCGGCATCGACTACCAGCGCAATCGCCTGGAGAACCGCGTGCCGGACGACCTG CTGGCGGCCCATGGCGGTGCGCTGGCGCTCGATGGCGCGCGCAGCCAGGACCTGCTGCAGGACCGCTACGGC CAGGTCTACCTCGGCAGCACCTGGCGCCGTGGCTTCCCTGGCGCGCTGAACCGCAGCCGTCCGCAATACACC TGGATCGTCGACACCCTGGCCGGCTGGCAGTGGACAGAGAAGGAGTTCAACTACGGCATCGATCTCGGCATC GGCATGGAGCTGCTGGGCGATGACGAACTGGCGTTCACCTTCGGCTACCAGTCGGCTCCCCAGGGCGGCGGC GGCGATGCCGGCGGCACGCTCGGGGTGACCTACAGCACGCGCTTCGGCCGCTGA