ViewGene
Locus Name:
GeneID:
Location:

GeneID:3399
TrivialName: PA14_08490
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_08490
PAO1 Ortholog Locus:PA0663
Sequence Length:720
Protein Length:239
Start: 727001
Stop: 727720
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04052.1|AE004501_4 (AE004501) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 238/239 (99%), Positives = 238/239 (99%)
Sequence:
ATGTCCGGCTGGGAACTCCAGTTCCGTGATCCACGGCGGGCCTGGCTGGTCCGCCTCGGGGTGGGTGCGCTG
CTGCTGGCGGTTCCGCTGGCGTTTCTCGGCGGTCGCTGGTCGACCGGGGCGGACGCCGCTCGCAGCGAGGCC
GATGCGCAACGCCAGGAAACCCTGATCGGCGAGCAGAAGGCCGAGCTGGAGCGCCTGCGTACCGAAATCGAG
GTGTTGCGCAGCGGAGAACGCCTCAGCCAGCAGGCCACCGAACAGAGCCGGCAGACCATCAAGCTGCTTGAG
GACCAGGTGTTCAAGCAGCAACAGGACATCGCGTTCTACAAGGGGGTAGTCGCGCCGGCCAGCAAGGCGGAT
GCGCTGGAAATCCGTGCCTTTGAGGTGCAGGGCACGGACGACCCGCAGCGCTTCCGCTATAAGGTGATGCTC
AGCCGCCTGGGCAGGGACGACCGCAAGCTGGATGGGCGGCTGAAAGTCCGCATCAGCGGCAAGCTGGCGCGC
AAGGACGCTACCTACGACCTCGAACAGCTCTCGCCGGAACTGGGCAAGGCAGGGCTGTCGATTTCCCTCCGG
CATTTCCAGTCGATCCCAGAAGGGGGGCGTTTCGCCGAGCTGGAGCTGCCGAAGAACTTCATCCCGAAGCTG
ATCGACGTACGTGCGGAGCTAAATGGCCAGTCCAAACCGCTACAGCGCCGTTTCGATTGGCCGAAGCAGTGA
Translation:
MSGWELQFRDPRRAWLVRLGVGALLLAVPLAFLGGRWSTGADAARSEADAQRQETLIGEQKAELERLRTEIE
VLRSGERLSQQATEQSRQTIKLLEDQVFKQQQDIAFYKGVVAPASKADALEIRAFEVQGTDDPQRFRYKVML
SRLGRDDRKLDGRLKVRISGKLARKDATYDLEQLSPELGKAGLSISLRHFQSIPEGGRFAELELPKNFIPKL
IDVRAELNGQSKPLQRRFDWPKQ*
AnnotationID:3407GeneID:3399
AnnotatorUID: diggins
Modification Date/Time: 2005-03-29 18:06:57
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA0663
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:6801




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23943




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3399
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5432
                           PA0663_tr
                           translation of PA0663
                           239
                           99.58
                           99.58
                           0
                           1201.0
     

     
     
151544
                           gb|AAG04052.1|AE004501_4
                           (AE004501) hypothetical protein PA0663 [Pseudomonas aeruginosa PAO1]
                           239
                           99.58
                           99.58
                           0
                           1201.0
     

     






      

          
GC ORFID: 46401How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0663Glimmer Score: 

          
Start: 6528344Stop: 6529063

          
Length: 720


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0663 translation of PA0663Homolog Bit Score 467.0

          
Other Homologs:  t_PA0663 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCCGGCTGGGAACTCCAGTTCCGTGATCCACGGCGGGCCTGGCTGGTCCGCCTCGGGGTGGGTGCGCTG 
CTGCTGGCGGTTCCGCTGGCGTTTCTCGGCGGTCGCTGGTCGACCGGGGCGGACGCCGCTCGCAGCGAGGCC 
GATGCGCAACGCCAGGAAACCCTGATCGGCGAGCAGAAGGCCGAGCTGGAGCGCCTGCGTACCGAAATCGAG 
GTGTTGCGCAGCGGAGAACGCCTCAGCCAGCAGGCCACCGAACAGAGCCGGCAGACCATCAAGCTGCTTGAG 
GACCAGGTGTTCAAGCAGCAACAGGACATCGCGTTCTACAAGGGGGTAGTCGCGCCGGCCAGCAAGGCGGAT 
GCGCTGGAAATCCGTGCCTTTGAGGTGCAGGGCACGGACGACCCGCAGCGCTTCCGCTATAAGGTGATGCTC 
AGCCGCCTGGGCAGGGACGACCGCAAGCTGGATGGGCGGCTGAAAGTCCGCATCAGCGGCAAGCTGGCGCGC 
AAGGACGCTACCTACGACCTCGAACAGCTCTCGCCGGAACTGGGCAAGGCAGGGCTGTCGATTTCCCTCCGG 
CATTTCCAGTCGATCCCAGAAGGGGGGCGTTTCGCCGAGCTGGAGCTGCCGAAGAACTTCATCCCGAAGCTG 
ATCGACGTACGTGCGGAGCTAAATGGCCAGTCCAAACCGCTACAGCGCCGTTTCGATTGGCCGAAGCAGTGA