ViewGene
Locus Name:
GeneID:
Location:

GeneID:3398
TrivialName: PA14_37290
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_37290
PAO1 Ortholog Locus:PA2111
Sequence Length:714
Protein Length:237
Start: 3320314
Stop: 3321027
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05499.1|AE004638_9 (AE004638) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 234/237 (98%), Positives = 235/237 (99%)
Sequence:
ATGAGCCAACCGCAACCGCGCATCGAGGTGGCCGCCATCGACAGCTTCGTCCTGCGCCTGTTCGAGCGCATC
GACGAAGCCAACATGCCCTGGCTGCTGGCGGCGGAGGAAAACCTGCGGGCGGCGTTCGGCGCCGCCCTGCTC
GACCTGGTGCCGTCCTACACCACCCTGCTCCTGCAATACGACCTGCTCCAGCTCGACCCCGGCGAGGCCCGC
GCGCGGATCGCCGCGGCGCTGTCCGACTTGCGCCCGAAACGCCAGGACGGCGGCCGCCTGCACGTCCTGCCG
ACCTGGTACGACCCGCGGGTCGGCCCCGACCTGGAACCCCTGGCGCGGCGCAAGCAGCTCGGCGTCGCCGAA
CTGATCCGCCGCCACAGCCAGCGCGAGTACCGGGTCTTCGCCCTCGGTTTCAGCCCCGGCTTCGCCTTCATG
GGGCTGGTCGAGGAAGCCCTGGCGGCACCCCGCCTGGCGACTCCCCGGCAACGCATCGCCGCCGGCAGCGTC
GGCATCGCCGAGCGCCAGACGGCGGTCTATCCGCAGGCCTCGCCAGGCGGCTGGAACCTGCTCGGGCGCTGC
CCGGTGCGCCTGTTCGACCTCGCCCTGGACGGCTACAGCCTGCTGCGCGCCGGCGACCGGGTGCGCTTCGAA
CCCATCGGACACGCCGAATTCGTCCGCCTcGgCGGCGACGACACGCCCCTgGAggtccAGGCATGA
Translation:
MSQPQPRIEVAAIDSFVLRLFERIDEANMPWLLAAEENLRAAFGAALLDLVPSYTTLLLQYDLLQLDPGEAR
ARIAAALSDLRPKRQDGGRLHVLPTWYDPRVGPDLEPLARRKQLGVAELIRRHSQREYRVFALGFSPGFAFM
GLVEEALAAPRLATPRQRIAAGSVGIAERQTAVYPQASPGGWNLLGRCPVRLFDLALDGYSLLRAGDRVRFE
PIGHAEFVRLGGDDTPLEVQA*
AnnotationID:3406GeneID:3398
AnnotatorUID: diggins
Modification Date/Time: 2005-03-03 08:08:42
Gene Name:
Confidence Code:3
GeneProduct:putative allophanate hydrolase subunit 1
Cell Localization:()
Synonyms:PA2111
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2049,pfam02682
Secondary Functional Category(ies):amino acid biosynthesis and metabolims
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG2049, DUR1, Allophanate hydrolase subunit 1 
[Amino acid transport and metabolism]
CD-Length = 223 residues,  99.6% aligned
Score =  241 bits (616), Expect = 6e-65
Identities = 94/222 (42%), Positives = 124/222 (55%)

pfam02682, AHS1, Allophanate hydrolase subunit 1
CD-Length = 201 residues,  99.5% aligned
Score =  132 bits (334), Expect = 3e-32
Identities = 70/201 (34%), Positives = 103/201 (51%), Gaps = 1/201 (0%)






   
Genomic Context:






   
Comment:


















    ReferenceID:6799




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23941




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32606




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3398_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3398
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5430
                           PA2111_tr
                           translation of PA2111
                           237
                           98.73
                           99.15
                           0
                           1202.0
     

     
     
151520
                           gb|AAG05499.1|AE004638_9
                           (AE004638) hypothetical protein PA2111 [Pseudomonas aeruginosa PAO1]
                           237
                           98.73
                           99.15
                           0
                           1202.0
     

     
     
151521
                           gb|AAN70149.1|AE016654_6
                           (AE016791) conserved hypothetical protein TIGR00370 [Pseudomonas putida KT2440]
                           237
                           62.86
                           74.68
                           8
                           763.0
     

     
     
5431
                           PA4510_tr
                           translation of PA4510
                           243
                           43.20
                           54.73
                           24
                           428.0
     

     
     
151522
                           gb|AAG07898.1|AE004864_10
                           (AE004864) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           243
                           43.20
                           54.73
                           24
                           430.0
     

     






      

          
GC ORFID: 46400How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2111Glimmer Score: 

          
Start: 1633600Stop: 1632887

          
Length: 714


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2111 translation of PA2111Homolog Bit Score 467.0

          
Other Homologs:  t_PA4510 (ORF: BLASTX 168.0), t_PA2111 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCCAACCGCAACCGCGCATCGAGGTGGCCGCCATCGACAGCTTCGTCCTGCGCCTGTTCGAGCGCATC 
GACGAAGCCAACATGCCCTGGCTGCTGGCGGCGGAGGAAAACCTGCGGGCGGCGTTCGGCGCCGCCCTGCTC 
GACCTGGTGCCGTCCTACACCACCCTGCTCCTGCAATACGACCTGCTCCAGCTCGACCCCGGCGAGGCCCGC 
GCGCGGATCGCCGCGGCGCTGTCCGACTTGCGCCCGAAACGCCAGGACGGCGGCCGCCTGCACGTCCTGCCG 
ACCTGGTACGACCCGCGGGTCGGCCCCGACCTGGAACCCCTGGCGCGGCGCAAGCAGCTCGGCGTCGCCGAA 
CTGATCCGCCGCCACAGCCAGCGCGAGTACCGGGTCTTCGCCCTCGGTTTCAGCCCCGGCTTCGCCTTCATG 
GGGCTGGTCGAGGAAGCCCTGGCGGCACCCCGCCTGGCGACTCCCCGGCAACGCATCGCCGCCGGCAGCGTC 
GGCATCGCCGAGCGCCAGACGGCGGTCTATCCGCAGGCCTCGCCAGGCGGCTGGAACCTGCTCGGGCGCTGC 
CCGGTGCGCCTGTTCGACCTCGCCCTGGACGGCTACAGCCTGCTGCGCGCCGGCGACCGGGTGCGCTTCGAA 
CCCATCGGACACGCCGAATTCGTCCGCCTcGgCGGCGACGACACGCCCCTgGAggtccAGGCATGA