ViewGene

Locus Name:
GeneID:
Location:

GeneID:3397
TrivialName: PA14_39710
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_39710
PAO1 Ortholog Locus:PA1919
Sequence Length:699
Protein Length:232
Start: 3538190
Stop: 3538888
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05307.1|AE004618_1 (AE004618) probable radical-activating enzyme [Pseudomonas aeruginosa PAO1]
Identities = 229/232 (98%), Positives = 229/232 (98%)
Sequence:
ATGAGCGCCACGCTCAGGGTCGGGGGCCTGGTGCCCCTGACCACCCTCGACTACCCCGGCCTGCTCGCCTGC
GTGCTGTTCTGCCAGGGCTGCGCCTGGCGCTGCCGCTACTGCCACAACCCGGAACTGATCGCGCCGCGCGGC
GCGGAGGAAATCCCCTGGCCACGCCTGCTCGACTTCCTCCGCCGACGCCAGGGCCTGTTGCAGGCGGTGGTC
TTCAGCGGCGGCGAGGCGACCCTACAGGCAGCCCTCGGCGACGCCATGCGCACGGTCCGCGAACTGGGCTTC
CGCGTCGGCCTACACAGCGCCGGCATCAACCCCCGCGCCTTCGCCCGGGTGCTGGCGCAGAGCGACTGGGTG
GGCTTCGACGTCAAGGCGCCGGCCGAGGACGTCGCCGCCATTACCGGCGTGGACGGCAGCGGCGCGGCCAAC
TGGCGCAGCCTGGAATGCCTGCTGGACAGCGGCGTGGCCTACGAATGCCGGACCACGGTGCACTGGCGCTTG
TTCGATAGCGAACGCCTCTGGCGCCTGGCGATGCGCCTGCGCGCGATGGGCGTGGAGCGCTTCGCCGTACAA
CTGGCGCGCCCGGCCCGCCAGCTCGATCCGCAGCTTCTCGCGAAGCCCGCGCCGCAGGGCGCTGCGCAGCTA
TGGCGAGAACTGGAAGAGCTGTTTCCCGCCTTCGAACTGCGCGACGCCTGA
Translation:
MSATLRVGGLVPLTTLDYPGLLACVLFCQGCAWRCRYCHNPELIAPRGAEEIPWPRLLDFLRRRQGLLQAVV
FSGGEATLQAALGDAMRTVRELGFRVGLHSAGINPRAFARVLAQSDWVGFDVKAPAEDVAAITGVDGSGAAN
WRSLECLLDSGVAYECRTTVHWRLFDSERLWRLAMRLRAMGVERFAVQLARPARQLDPQLLAKPAPQGAAQL
WRELEELFPAFELRDA*
AnnotationID:3405GeneID:3397
AnnotatorUID: diggins
Modification Date/Time: 2005-03-02 11:11:54
Gene Name:
Confidence Code:3
GeneProduct:putative radical-activating enzyme
Cell Localization:()
Synonyms:nrdG
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(26) Translation, post-translational modification, degradation
Alternate Gene Product Name:putative activase of anaerobic class III ribonucleotide reductase
Functional Category Confidence Code:5
COGs:COG1180
Secondary Functional Category(ies):posttranslational modification, protein turnover, chaperones
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAP85990.1| (AY305378) activase of anaerobic class III ribonucleotide reductase
           [Ralstonia eutropha]
          Length = 239

 Score =  198 bits (504), Expect = 2e-50
 Identities = 101/194 (52%), Positives = 124/194 (63%)

>emb|CAD18116.1| (AL646082) PUTATIVE RIBONUCLEOTIDE REDUCTASE ACTIVATING
           TRANSMEMBRANE PROTEIN [Ralstonia solanacearum]
          Length = 246

 Score =  171 bits (433), Expect = 3e-42
 Identities = 99/224 (44%), Positives = 123/224 (54%), Gaps = 8/224 (3%)
Structural Features:
COG1180, PflA, Pyruvate-formate lyase-activating enzyme 
[Posttranslational modification, protein turnover, chaperones]
CD-Length = 260 residues,  88.1% aligned
Score =  151 bits (383), Expect = 7e-38
Identities = 69/237 (29%), Positives = 96/237 (40%), Gaps = 15/237 (6%)
Genomic Context:
Comment:
ReferenceID:6797
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:23939
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:37036
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:3397_cdd.html
URL:
Homologs By Global Alignment
Gene ID:3397

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
5429 PA1919_tr translation of PA1919 232 98.70 98.70 0 1201.0
151515 gb|AAG05307.1|AE004618_1 (AE004618) probable radical-activating enzyme [Pseudomonas aeruginosa PAO1] 232 98.70 98.70 0 1201.0
151516 gb|AAP85990.1| (AY305378) activase of anaerobic class III ribonucleotide reductase [Ralstonia eutropha] 253 44.26 54.54 35 508.0
151517 emb|CAA10042.1| (AJ012479) NrdG protein [Ralstonia eutropha] 270 41.48 51.11 52 508.0
151518 emb|CAD18116.1| (AL646082) PUTATIVE RIBONUCLEOTIDE REDUCTASE ACTIVATING TRANSMEMBRANE PROTEIN [Ralstonia solanacearum] 256 39.06 48.43 34 438.0
GC ORFID: 46399How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA1919Glimmer Score:
Start: 1415721Stop: 1415023
Length: 699
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA1919 translation of PA1919Homolog Bit Score 467.0
Other Homologs: t_PA1919 (ORF: GLIMMER)
GC ORF Sequence
ATGAGCGCCACGCTCAGGGTCGGGGGCCTGGTGCCCCTGACCACCCTCGACTACCCCGGCCTGCTCGCCTGC
GTGCTGTTCTGCCAGGGCTGCGCCTGGCGCTGCCGCTACTGCCACAACCCGGAACTGATCGCGCCGCGCGGC
GCGGAGGAAATCCCCTGGCCACGCCTGCTCGACTTCCTCCGCCGACGCCAGGGCCTGTTGCAGGCGGTGGTC
TTCAGCGGCGGCGAGGCGACCCTACAGGCAGCCCTCGGCGACGCCATGCGCACGGTCCGCGAACTGGGCTTC
CGCGTCGGCCTACACAGCGCCGGCATCAACCCCCGCGCCTTCGCCCGGGTGCTGGCGCAGAGCGACTGGGTG
GGCTTCGACGTCAAGGCGCCGGCCGAGGACGTCGCCGCCATTACCGGCGTGGACGGCAGCGGCGCGGCCAAC
TGGCGCAGCCTGGAATGCCTGCTGGACAGCGGCGTGGCCTACGAATGCCGGACCACGGTGCACTGGCGCTTG
TTCGATAGCGAACGCCTCTGGCGCCTGGCGATGCGCCTGCGCGCGATGGGCGTGGAGCGCTTCGCCGTACAA
CTGGCGCGCCCGGCCCGCCAGCTCGATCCGCAGCTTCTCGCGAAGCCCGCGCCGCAGGGCGCTGCGCAGCTA
TGGCGAGAACTGGAAGAGCTGTTTCCCGCCTTCGAACTGCGCGACGCCTGA