ViewGene

Locus Name:
GeneID:
Location:

GeneID: 3396

TrivialName: PA14_58810

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_58810

PAO1 Ortholog Locus: PA4532

Sequence Length: 690

Protein Length: 229

Start: 5239924

Stop: 5239235

Strand: -

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG07920.1|AE004867_6 (AE004867) hypothetical protein [Pseudomonas aeruginosa PAO1] Identities = 229/229 (100%), Positives = 229/229 (100%)

Sequence:

GTGATCGCGGCCGAGTTGCTGTCGGCGGAAAGCCTGGAACTGGGCTGGGCCATCTATGCACCGGTGCTGCTG
CTCGCCGCCTGGCGCGCGCCCTGGGTCGAGCTGGTCAGCGATACCCGCCGCCAGCACCTGGTGTTCGGTACC
ATGCTCGGGCTGTTCCTGCTCTGGCTGGTGCGCCGGGACTTCGAATCGGGGCTGTCCTTCCATTTCATCGGC
ATGACCGCCGTCACCTTGCTGCTCGACTGGCCGCTGGCGATCGTGGTGGGGCTGGTGGCGCAACTGGGCTTG
TGCCTGCTCGGCCGCCAGGATTGGCTGGCGATCGGCGTCAACGGCGTGCTGCTGGTGGCGATCCCCGCGCTG
ATCGCGGAGCTGGCGGCGTTGTTCGTGGAAAAGCGCCAGCCGCGCAACCTGTTCGTCTACATCTTCTGCTGC
GGTTTCTTCCCGGCGGCCCTCACCGCGGTGGTGGTCCTGCTGCTCGGCCTTGGCGTGGTCTGGATCGACGGC
CTTTTCCCGATGCCGCCCTGGCTGGAGGACTTCGCTGGTTACCTGTGGCTGATCATGTTCCCCGAGGCCTTC
ATCAACGGCACGGTGATCACCGGCCTGGTGGTCTACTACCCGGAGTGGCTGGAAACCTTCAATCGCACGCGC
TACCTGCAGGCGCCCTGGAAGGACGAAGAGCGCAAGCCCTGA

Translation:

MIAAELLSAESLELGWAIYAPVLLLAAWRAPWVELVSDTRRQHLVFGTMLGLFLLWLVRRDFESGLSFHFIG
MTAVTLLLDWPLAIVVGLVAQLGLCLLGRQDWLAIGVNGVLLVAIPALIAELAALFVEKRQPRNLFVYIFCC
GFFPAALTAVVVLLLGLGVVWIDGLFPMPPWLEDFAGYLWLIMFPEAFINGTVITGLVVYYPEWLETFNRTR
YLQAPWKDEERKP*

AnnotationID:3404 GeneID:3396

AnnotatorUID: diggins

Modification Date/Time: 2005-05-04 17:05:09

Gene Name:

Confidence Code: 4

GeneProduct: conserved hypothetical protein

Cell Localization: ()

Synonyms: PA4532

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

Genomic Context:

Comment:

ReferenceID:14823

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:23937

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:31576

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 3396_cdd.html

URL:

Homologs By Global Alignment

Gene ID:3396

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

5428 PA4532_tr translation of PA4532 229 99.99 99.99 0 1204.0

151513 gb|AAG07920.1|AE004867_6 (AE004867) hypothetical protein PA4532 [Pseudomonas aeruginosa PAO1] 229 99.56 99.99 0 1201.0

151514 gb|AAN66254.1|AE016254_1 (AE016776) conserved hypothetical protein [Pseudomonas putida KT2440] 264 57.19 70.07 37 835.0

GC ORFID: `46398`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA4532`	Glimmer Score:
Start: `4503603`	Stop: `4502914`
Length: `690`
Start Codon: `GTG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog: `t_PA4532 translation of PA4532`	Homolog Bit Score `468.0`
Other Homologs: `t_PA4532 (ORF: GLIMMER)`
GC ORF Sequence
GTGATCGCGGCCGAGTTGCTGTCGGCGGAAAGCCTGGAACTGGGCTGGGCCATCTATGCACCGGTGCTGCTG CTCGCCGCCTGGCGCGCGCCCTGGGTCGAGCTGGTCAGCGATACCCGCCGCCAGCACCTGGTGTTCGGTACC ATGCTCGGGCTGTTCCTGCTCTGGCTGGTGCGCCGGGACTTCGAATCGGGGCTGTCCTTCCATTTCATCGGC ATGACCGCCGTCACCTTGCTGCTCGACTGGCCGCTGGCGATCGTGGTGGGGCTGGTGGCGCAACTGGGCTTG TGCCTGCTCGGCCGCCAGGATTGGCTGGCGATCGGCGTCAACGGCGTGCTGCTGGTGGCGATCCCCGCGCTG ATCGCGGAGCTGGCGGCGTTGTTCGTGGAAAAGCGCCAGCCGCGCAACCTGTTCGTCTACATCTTCTGCTGC GGTTTCTTCCCGGCGGCCCTCACCGCGGTGGTGGTCCTGCTGCTCGGCCTTGGCGTGGTCTGGATCGACGGC CTTTTCCCGATGCCGCCCTGGCTGGAGGACTTCGCTGGTTACCTGTGGCTGATCATGTTCCCCGAGGCCTTC ATCAACGGCACGGTGATCACCGGCCTGGTGGTCTACTACCCGGAGTGGCTGGAAACCTTCAATCGCACGCGC TACCTGCAGGCGCCCTGGAAGGACGAAGAGCGCAAGCCCTGA