ViewGene
Locus Name:
GeneID:
Location:

GeneID:3395
TrivialName: PA14_10890
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_10890
PAO1 Ortholog Locus:PA4098
Sequence Length:726
Protein Length:241
Start: 942700
Stop: 941975
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07485.1|AE004826_3 (AE004826) probable short-chain dehydrogenase [Pseudomonas aeruginosa PAO1]
Identities = 241/241 (100%), Positives = 241/241 (100%)
Sequence:
ATGGTTTTCCAACACGATATCTACGCCGGCCAGCAGGTGCTGGTCACTGGCGGCAGCTCCGGCATCGGCGCG
GCCATCGCCATGCAGTTCGCCGAACTCGGCGCCGAAGTCGTCGCCCTCGGCCTGGACGCCGACGGCGTGCAC
GCACCGCGTCATCCGCGGATTCGCCGGGAAGAACTGGACATCACCGACAGCCAGCGCCTGCAACGGCTGTTC
GAAGCGCTGCCGCGCCTGGATGTGCTGGTGAACAACGCCGGCATCAGCCGCGACCGCGAGGAATACGACCTG
GCGACCTTCGAACGGGTGCTGCGCCTCAACCTGAGCGCCGCCATGCTCGCCAGCCAACTGGCCCGTCCGCTG
CTGGCGCAGCGCGGCGGCAGCATCCTCAACATCGCCTCGATGTACAGCACCTTCGGTTCCGCCGACCGCCCG
GCCTACAGCGCCAGCAAGGGCGCCATCGTCCAGCTCACCCGTTCCCTGGCCTGCGAGTATGCCGCCGAGCGC
ATCCGGGTCAACGCCATCGCCCCCGGCTGGATCGACACGCCGCTGGGCGCCGGGCTCAAGGCCGACGTCGAG
GCCACCCGCCGGATCATGCAGCGCACGCCGCTGGCGCGCTGGGGCGAGGCGCCCGAGGTGGCCAGCGCCGCG
GCCTTCCTCTGCGGTCCCGGCGCCAGCTTCGTCACCGGCGCCGTGCTGGCGGTGGACGGCGGCTATCTCTGC
GCCTGA
Translation:
MVFQHDIYAGQQVLVTGGSSGIGAAIAMQFAELGAEVVALGLDADGVHAPRHPRIRREELDITDSQRLQRLF
EALPRLDVLVNNAGISRDREEYDLATFERVLRLNLSAAMLASQLARPLLAQRGGSILNIASMYSTFGSADRP
AYSASKGAIVQLTRSLACEYAAERIRVNAIAPGWIDTPLGAGLKADVEATRRIMQRTPLARWGEAPEVASAA
AFLCGPGASFVTGAVLAVDGGYLCA*
AnnotationID:3403GeneID:3395
AnnotatorUID: diggins
Modification Date/Time: 2005-03-30 10:10:34
Gene Name:
Confidence Code:3
GeneProduct:putative short-chain dehydrogenase
Cell Localization:()
Synonyms:PA4098
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam00106,COG1028
Secondary Functional Category(ies):secondary metabolites, biosynthesis, transport, and catabolism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO56543.1| (AE016866) oxidoreductase, short chain dehydrogenase/reductase
           family [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 243

 Score =  201 bits (512), Expect = 2e-51
 Identities = 113/238 (47%), Positives = 151/238 (63%), Gaps = 1/238 (0%)

>emb|CAC47142.1| (AL591791) PUTATIVE OXIDOREDUCTASE PROTEIN [Sinorhizobium meliloti]
          Length = 252

 Score =  186 bits (473), Expect = 8e-47
 Identities = 105/241 (43%), Positives = 141/241 (58%), Gaps = 4/241 (1%)






 
Structural Features:
pfam00106, adh_short, short chain dehydrogenase.
CD-Length = 247 residues, 100.0% aligned
Score =  172 bits (436), Expect = 4e-44
Identities = 98/247 (39%), Positives = 128/247 (51%), Gaps = 21/247 (8%)

COG1028, FabG, Dehydrogenases with different specificities 
(related to short-chain alcohol dehydrogenases) 
[Secondary metabolites biosynthesis, transport, and catabolism]
CD-Length = 251 residues,  98.8% aligned
Score =  154 bits (390), Expect = 8e-39
Identities = 99/250 (39%), Positives = 135/250 (54%), Gaps = 21/250 (8%)






   
Genomic Context:






   
Comment:


















    ReferenceID:6793




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23935




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36846




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3395_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3395
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5427
                           PA4098_tr
                           translation of PA4098
                           241
                           99.99
                           99.99
                           0
                           1205.0
     

     
     
151503
                           gb|AAG07485.1|AE004826_3
                           (AE004826) probable short-chain dehydrogenase [Pseudomonas aeruginosa PAO1]
                           241
                           99.99
                           99.99
                           0
                           1205.0
     

     
     
151504
                           gb|AAO56543.1|
                           (AE016866) oxidoreductase, short chain dehydrogenase/reductase family [Pseudomonas syringae pv. tomato str. DC3000]
                           244
                           46.31
                           62.29
                           4
                           513.0
     

     
     
151505
                           emb|CAC47142.1|
                           (AL591791) PUTATIVE OXIDOREDUCTASE PROTEIN [Sinorhizobium meliloti]
                           252
                           41.66
                           55.95
                           11
                           472.0
     

     
     
151506
                           dbj|BAC51623.1|
                           (AP005958) blr6358 [Bradyrhizobium japonicum USDA 110]
                           244
                           40.16
                           57.78
                           3
                           448.0
     

     






      

          
GC ORFID: 46397How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4098Glimmer Score: 

          
Start: 4011237Stop: 4011962

          
Length: 726


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4098 translation of PA4098Homolog Bit Score 468.0

          
Other Homologs:  t_PA4098 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGTTTTCCAACACGATATCTACGCCGGCCAGCAGGTGCTGGTCACTGGCGGCAGCTCCGGCATCGGCGCG 
GCCATCGCCATGCAGTTCGCCGAACTCGGCGCCGAAGTCGTCGCCCTCGGCCTGGACGCCGACGGCGTGCAC 
GCACCGCGTCATCCGCGGATTCGCCGGGAAGAACTGGACATCACCGACAGCCAGCGCCTGCAACGGCTGTTC 
GAAGCGCTGCCGCGCCTGGATGTGCTGGTGAACAACGCCGGCATCAGCCGCGACCGCGAGGAATACGACCTG 
GCGACCTTCGAACGGGTGCTGCGCCTCAACCTGAGCGCCGCCATGCTCGCCAGCCAACTGGCCCGTCCGCTG 
CTGGCGCAGCGCGGCGGCAGCATCCTCAACATCGCCTCGATGTACAGCACCTTCGGTTCCGCCGACCGCCCG 
GCCTACAGCGCCAGCAAGGGCGCCATCGTCCAGCTCACCCGTTCCCTGGCCTGCGAGTATGCCGCCGAGCGC 
ATCCGGGTCAACGCCATCGCCCCCGGCTGGATCGACACGCCGCTGGGCGCCGGGCTCAAGGCCGACGTCGAG 
GCCACCCGCCGGATCATGCAGCGCACGCCGCTGGCGCGCTGGGGCGAGGCGCCCGAGGTGGCCAGCGCCGCG 
GCCTTCCTCTGCGGTCCCGGCGCCAGCTTCGTCACCGGCGCCGTGCTGGCGGTGGACGGCGGCTATCTCTGC 
GCCTGA