ViewGene
Locus Name:
GeneID:
Location:

GeneID:3394
TrivialName: PA14_20350
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_20350
PAO1 Ortholog Locus:PA3381
Sequence Length:723
Protein Length:240
Start: 1751065
Stop: 1751787
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06769.1|AE004759_16 (AE004759) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 239/240 (99%), Positives = 239/240 (99%)
Sequence:
GTGCGCCCTTTCCAAACCATGCACTTGTCTAGACAAAGCGAACCGCTGTACCGCGAACTGGCCGAACGGCTG
CGCCAGGAACTGCTGGCCTACCGCCCCGGCGACTACCTGCCCGGCGAGATCCAGCTGGCCCAGCGCTTCGCG
GTGAACCGCCATACCCTGCGCCGGGCGCTCGACGAACTGGTGCTCGAAGGCCGCGTGCTGCGGCGCCAGGGC
AAGGGCACCCAGGTCCTGGAGGCGCCGACGATCTACCCGATGGGCGCCGCCAACGCCTACACCGAGTCGCTC
TCGGCCCAGGGCCACCGGGTCGAGGCCCGGCTGCTGGAGGCGCGCCAGCGTCCGGCCGGCGCCGCCGAGGCC
ACCCACCTGGGGATCGGCGAGGGCGGGCGGGTGCTGGAACTGACCACCCTGCGTTACCTCGACGGCCAGCCG
GTGAGCCTGATCCGCCATTGCTACGCCGTTTCCCGCAGCGAGCTGCTCGCCGACTACCAGGGCGGTTCGCTG
CGTCGCTACCTGGCCGACAAAGGCCTGCCGCTGACCCGCACCTACAGCCTGATCGGTGCGCGCCTGCCCAAC
CGCGAGGAGGCGGCGCGCCTGCTGATGCCCCGCCATGCGCCGTTGCTCACCGTCCTCACCCTGTCCCGCGAC
CGTACCGGCCAACCGGTGGAACTGGCCCAGTCGATCAGCCGCGCCGATCGCTTCCAGTACCAGGTCGCCCCC
TAG
Translation:
MRPFQTMHLSRQSEPLYRELAERLRQELLAYRPGDYLPGEIQLAQRFAVNRHTLRRALDELVLEGRVLRRQG
KGTQVLEAPTIYPMGAANAYTESLSAQGHRVEARLLEARQRPAGAAEATHLGIGEGGRVLELTTLRYLDGQP
VSLIRHCYAVSRSELLADYQGGSLRRYLADKGLPLTRTYSLIGARLPNREEAARLLMPRHAPLLTVLTLSRD
RTGQPVELAQSISRADRFQYQVAP*
AnnotationID:3402GeneID:3394
AnnotatorUID: diggins
Modification Date/Time: 2005-04-18 07:07:23
Gene Name:phnF
Confidence Code:3
GeneProduct:putative transcriptional regulator
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2188
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO56063.1| (AE016865) transcriptional regulator PhnF [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 239

 Score =  301 bits (771), Expect = 2e-81
 Identities = 160/233 (68%), Positives = 183/233 (78%)

>gb|AAN83532.1|AE016771_43 (AE016771) Probable transcriptional regulator phnF [Escherichia
           coli CFT073]
          Length = 244

 Score =  153 bits (386), Expect = 1e-36
 Identities = 103/238 (43%), Positives = 140/238 (58%), Gaps = 7/238 (2%)








 
Structural Features:
COG2188, PhnF, Transcriptional regulators [Transcription]
CD-Length = 236 residues,  96.6% aligned
Score =  178 bits (454), Expect = 4e-46
Identities = 90/228 (39%), Positives = 130/228 (57%), Gaps = 4/228 (1%)






   
Genomic Context:






   
Comment:


















    ReferenceID:14821




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23933




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32181




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3394_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3394
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5426
                           PA3381_tr
                           translation of PA3381
                           240
                           99.58
                           99.58
                           0
                           1205.0
     

     
     
151492
                           gb|AAG06769.1|AE004759_16
                           (AE004759) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           240
                           99.16
                           99.58
                           0
                           1202.0
     

     
     
151493
                           gb|AAO56063.1|
                           (AE016865) transcriptional regulator PhnF [Pseudomonas syringae pv. tomato str. DC3000]
                           245
                           65.30
                           74.69
                           11
                           770.0
     

     
     
151500
                           dbj|BAB38508.1|
                           (AP002568) putative transcriptional regulator [Escherichia coli O157:H7]
                           248
                           42.33
                           56.85
                           15
                           395.0
     

     
     
151499
                           gb|AAG59302.1|AE005643_9
                           (AE005643) putative transcriptional regulator [Escherichia coli O157:H7 EDL933]
                           248
                           42.33
                           56.85
                           15
                           395.0
     

     






      

          
GC ORFID: 46396How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3381Glimmer Score: 

          
Start: 3202867Stop: 3202145

          
Length: 723


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA3381 translation of PA3381Homolog Bit Score 468.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene1219 (ORF: BLASTX 292.0), t_PA3381 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGCGCCCTTTCCAAACCATGCACTTGTCTAGACAAAGCGAACCGCTGTACCGCGAACTGGCCGAACGGCTG 
CGCCAGGAACTGCTGGCCTACCGCCCCGGCGACTACCTGCCCGGCGAGATCCAGCTGGCCCAGCGCTTCGCG 
GTGAACCGCCATACCCTGCGCCGGGCGCTCGACGAACTGGTGCTCGAAGGCCGCGTGCTGCGGCGCCAGGGC 
AAGGGCACCCAGGTCCTGGAGGCGCCGACGATCTACCCGATGGGCGCCGCCAACGCCTACACCGAGTCGCTC 
TCGGCCCAGGGCCACCGGGTCGAGGCCCGGCTGCTGGAGGCGCGCCAGCGTCCGGCCGGCGCCGCCGAGGCC 
ACCCACCTGGGGATCGGCGAGGGCGGGCGGGTGCTGGAACTGACCACCCTGCGTTACCTCGACGGCCAGCCG 
GTGAGCCTGATCCGCCATTGCTACGCCGTTTCCCGCAGCGAGCTGCTCGCCGACTACCAGGGCGGTTCGCTG 
CGTCGCTACCTGGCCGACAAAGGCCTGCCGCTGACCCGCACCTACAGCCTGATCGGTGCGCGCCTGCCCAAC 
CGCGAGGAGGCGGCGCGCCTGCTGATGCCCCGCCATGCGCCGTTGCTCACCGTCCTCACCCTGTCCCGCGAC 
CGTACCGGCCAACCGGTGGAACTGGCCCAGTCGATCAGCCGCGCCGATCGCTTCCAGTACCAGGTCGCCCCC 
TAG