ViewGene
Locus Name:
GeneID:
Location:

GeneID:3393
TrivialName: PA14_45430
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_45430
PAO1 Ortholog Locus:PA1470
Sequence Length:738
Protein Length:245
Start: 4045993
Stop: 4045256
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04859.1|AE004576_8 (AE004576) probable short-chain dehydrogenase [Pseudomonas aeruginosa PAO1]
Identities = 244/245 (99%), Positives = 245/245 (100%)
Sequence:
ATGCCTGACATCACCCAAGCCGCCATCGTCACCGGCGCCTCCCGCGGCATCGGTCGCGCCATTGCCCGGCGG
CTGGCCGCCGACGGTTTCGCGGTCGCGGTCAACTATGCCAGCAACCAGGCCATGGCCGACGAGATCGTGGCC
GAAATCGTCGCCGCCGGCGGCGCGGCCATCGCCGTGCAGGGCGACGTGGCCAGCGCGGAGGACATGGACAAG
CTGTTCGAAGCCACCAGGGGCGCCTTCGGCCGCATCGACGTGGTGGTCAACAGCGCCGGCACGATGCCCTAC
CTGAAGATCGCCGATGGCGACCTGGAGGGCTTCGACCGGGTGATCCGCACCAACCTGCGCGGCGCCTTCATC
GTGCTCGGCCTGGCTGCCCGGCATGTCGAGCGCGGCGGACGGATCATCGCCCTGTCCACCAGCGTGATTGCC
CGGGCGCTGCCCAGCTACGGTCCGTACATCGCGTCCAAGTCCGGGGTCGAGGGGCTGGTGCACGTGCTGGCC
AACGAGTTGCGCGGCCAGGACATCAGGGTCAACGCGGTGGCGCCCGGCCCGGTGGCCACCGAGCTGTTCTTC
AACGGCAAGAGCGCCGAACAGATCGACCAGATCGCCAGGCTGGCGCCGCTGGAGCGTCTCGGCGAACCGGAC
GAGATCGCCGCGGCGGTGTCCTTCCTCGCCGGGCCGGACGGGGCCTGGGTCAATTCCCAGGTGCTGCGGGTC
AACGGCGGTTTCGCCTGA
Translation:
MPDITQAAIVTGASRGIGRAIARRLAADGFAVAVNYASNQAMADEIVAEIVAAGGAAIAVQGDVASAEDMDK
LFEATRGAFGRIDVVVNSAGTMPYLKIADGDLEGFDRVIRTNLRGAFIVLGLAARHVERGGRIIALSTSVIA
RALPSYGPYIASKSGVEGLVHVLANELRGQDIRVNAVAPGPVATELFFNGKSAEQIDQIARLAPLERLGEPD
EIAAAVSFLAGPDGAWVNSQVLRVNGGFA*
AnnotationID:3401GeneID:3393
AnnotatorUID: diggins
Modification Date/Time: 2005-02-24 13:01:52
Gene Name:
Confidence Code:3
GeneProduct:putative short-chain dehydrogenase
Cell Localization:()
Synonyms:PA1470
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam00106,COG1028,COG4221
Secondary Functional Category(ies):secondary metabolites, biosynthesis, transport, and catabolism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAE32955.1| (BX640444) probable short-chain dehydrogenase [Bordetella
           bronchiseptica]
          Length = 246

 Score =  336 bits (861), Expect = 8e-92
 Identities = 175/243 (72%), Positives = 198/243 (81%)

>emb|CAC48875.1| (AL603643) putative short chain dehydrogenasereductase protein
           [Sinorhizobium meliloti]
          Length = 244

 Score =  266 bits (679), Expect = 1e-70
 Identities = 139/241 (57%), Positives = 169/241 (70%)

>emb|CAB82049.1| (AL939121) putative short chain dehydrogenase [Streptomyces
           coelicolor A3(2)]
          Length = 269

 Score =  263 bits (671), Expect = 9e-70
 Identities = 132/238 (55%), Positives = 165/238 (69%)








 
Structural Features:
pfam00106, adh_short, short chain dehydrogenase. 
CD-Length = 247 residues, 100.0% aligned
Score =  162 bits (411), Expect = 4e-41
Identities = 91/248 (36%), Positives = 123/248 (49%), Gaps = 12/248 (4%)

COG1028, FabG, Dehydrogenases with different specificities 
(related to short-chain alcohol dehydrogenases) 
[Secondary metabolites biosynthesis, transport, and catabolism]
CD-Length = 251 residues,  98.0% aligned
Score =  151 bits (382), Expect = 6e-38
Identities = 98/247 (39%), Positives = 135/247 (54%), Gaps = 8/247 (3%)

COG4221, COG4221, Short-chain alcohol dehydrogenase of unknown specificity
CD-Length = 246 residues,  88.6% aligned
Score =  116 bits (293), Expect = 2e-27
Identities = 73/224 (32%), Positives = 105/224 (46%), Gaps = 11/224 (4%)






   
Genomic Context:






   
Comment:


















    ReferenceID:6789




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23931




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37352




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3393_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3393
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5425
                           PA1470_tr
                           translation of PA1470
                           245
                           99.59
                           99.99
                           0
                           1204.0
     

     
     
151451
                           gb|AAG04859.1|AE004576_8
                           (AE004576) probable short-chain dehydrogenase [Pseudomonas aeruginosa PAO1]
                           245
                           99.59
                           99.99
                           0
                           1204.0
     

     
     
151452
                           emb|CAE32955.1|
                           (BX640444) probable short-chain dehydrogenase [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50]
                           246
                           71.13
                           80.48
                           1
                           857.0
     

     
     
151453
                           emb|CAE36694.1|
                           (BX640427) probable short-chain dehydrogenase [Bordetella parapertussis]
                           246
                           70.73
                           80.08
                           1
                           852.0
     

     
     
151454
                           emb|CAC48875.1|
                           (AL603643) putative short chain dehydrogenasereductase protein [Sinorhizobium meliloti]
                           245
                           56.73
                           68.97
                           1
                           676.0
     

     






      

          
GC ORFID: 46395How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1470Glimmer Score: 

          
Start: 907916Stop: 908653

          
Length: 738


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1470 translation of PA1470Homolog Bit Score 468.0

          
Other Homologs:  t_PA1470 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCTGACATCACCCAAGCCGCCATCGTCACCGGCGCCTCCCGCGGCATCGGTCGCGCCATTGCCCGGCGG 
CTGGCCGCCGACGGTTTCGCGGTCGCGGTCAACTATGCCAGCAACCAGGCCATGGCCGACGAGATCGTGGCC 
GAAATCGTCGCCGCCGGCGGCGCGGCCATCGCCGTGCAGGGCGACGTGGCCAGCGCGGAGGACATGGACAAG 
CTGTTCGAAGCCACCAGGGGCGCCTTCGGCCGCATCGACGTGGTGGTCAACAGCGCCGGCACGATGCCCTAC 
CTGAAGATCGCCGATGGCGACCTGGAGGGCTTCGACCGGGTGATCCGCACCAACCTGCGCGGCGCCTTCATC 
GTGCTCGGCCTGGCTGCCCGGCATGTCGAGCGCGGCGGACGGATCATCGCCCTGTCCACCAGCGTGATTGCC 
CGGGCGCTGCCCAGCTACGGTCCGTACATCGCGTCCAAGTCCGGGGTCGAGGGGCTGGTGCACGTGCTGGCC 
AACGAGTTGCGCGGCCAGGACATCAGGGTCAACGCGGTGGCGCCCGGCCCGGTGGCCACCGAGCTGTTCTTC 
AACGGCAAGAGCGCCGAACAGATCGACCAGATCGCCAGGCTGGCGCCGCTGGAGCGTCTCGGCGAACCGGAC 
GAGATCGCCGCGGCGGTGTCCTTCCTCGCCGGGCCGGACGGGGCCTGGGTCAATTCCCAGGTGCTGCGGGTC 
AACGGCGGTTTCGCCTGA