ViewGene
Locus Name:
GeneID:
Location:

GeneID:3391
TrivialName: PA14_54800
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_54800
PAO1 Ortholog Locus:PA0733
Sequence Length:693
Protein Length:230
Start: 4855970
Stop: 4856662
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04122.1|AE004508_7 (AE004508) probable pseudouridylate synthase [Pseudomonas aeruginosa PAO1]
Identities = 225/230 (97%), Positives = 227/230 (98%)
Sequence:
ATGCGCCTGGACCGCTTCCTCGCCAACCTGCCCGAACTCAGCCGCCGCGACGCGCAGATGCTGATCGCCGGT
GGACGCCTGCGCGTGGACGGCCAGGTGGTGCGCGACGGCACCCACGAAGTGCGTGTCTTCAGCCGGGTGGAA
CTGGACGAGCAGCTGCTCCAGGCTGGCAAGCCGGCGCGCTACTACATGCTGCATAAACCGATGGGCTGCGTC
AGCGCCACCCGCGACCCGCAACACCCGACCGTCCTCGACCTGCTCCCGGAAGACCAGCGCGACGACCTGCAC
ATTGGCGGTCGTCTCGACTACAACACCACCGGCCTGATGCTGCTGACCAACGACGGCCAGTGGTCGCGCCGC
CTGACCCTGCCGGGCAGCCGGCGCGACAAGGTCTACTACGTGGAAACCGAGGCGCCCATCGACCAACGCTAC
GTGGATGCCTTCGCCGCCGGCCTCCACTTCCGCTTCGAAGACCTGATCACCCTCCCCGCGCAGCTCGAACCG
ATCGGCCCACGCTGCGCCCGCCTGACCCTGCACGAAGGCCGCTATCACCAGGTCAAGCGCATGTTCGGCCAC
TTCGACAACAAGGTGCTGCGCCTGCACCGCGAGCGCATGGGCGATATTTGTCTCGACCCGCAGTTGCCGCCG
GGTGCCTGGCGCCCCCTGAATGCTGAAGAAATCTGTTCGGTGTGA
Translation:
MRLDRFLANLPELSRRDAQMLIAGGRLRVDGQVVRDGTHEVRVFSRVELDEQLLQAGKPARYYMLHKPMGCV
SATRDPQHPTVLDLLPEDQRDDLHIGGRLDYNTTGLMLLTNDGQWSRRLTLPGSRRDKVYYVETEAPIDQRY
VDAFAAGLHFRFEDLITLPAQLEPIGPRCARLTLHEGRYHQVKRMFGHFDNKVLRLHRERMGDICLDPQLPP
GAWRPLNAEEICSV*
AnnotationID:3399GeneID:3391
AnnotatorUID: danlee
Modification Date/Time: 2004-03-26 16:04:18
Gene Name:
Confidence Code:3
GeneProduct:putative pseudouridylate synthase
Cell Localization:()
Synonyms:PA0733, rsuA
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(24) Transcription, RNA processing and degradation
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG1187, RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate
synthases [Translation, ribosomal structure and biogenesis]
    CD-Length = 248 residues,  96.0% aligned
    Score =  231 bits (590), Expect = 1e-61






   
Genomic Context:






   
Comment:


















    ReferenceID:6785




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23927




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3391
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5423
                           PA0733_tr
                           translation of PA0733
                           230
                           97.82
                           98.69
                           0
                           1204.0
     

     
     
151421
                           gb|AAG04122.1|AE004508_7
                           (AE004508) probable pseudouridylate synthase [Pseudomonas aeruginosa PAO1]
                           230
                           97.82
                           98.69
                           0
                           1204.0
     

     
     
151432
                           gb|AAA16377.1|
                           (U00008) yejD [Escherichia coli]
                           231
                           47.61
                           59.30
                           1
                           505.0
     

     
     
151431
                           dbj|BAB36498.1|
                           (AP002560) 16S pseudouridylate 516 synthase [Escherichia coli O157:H7]
                           231
                           47.61
                           59.30
                           1
                           505.0
     

     
     
151430
                           gb|AAB34905.1|
                           16S RNA pseudouridine 516 synthase, 16S RNA psi 516 synthase=rsuA gene product [Escherichia coli, Peptide, 231 aa]
                           231
                           47.61
                           59.30
                           1
                           505.0
     

     






      

          
GC ORFID: 46393How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0733Glimmer Score: 

          
Start: 97937Stop: 97245

          
Length: 693


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0733 translation of PA0733Homolog Bit Score 468.0

          
Other Homologs:  t_PA0733 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGCCTGGACCGCTTCCTCGCCAACCTGCCCGAACTCAGCCGCCGCGACGCGCAGATGCTGATCGCCGGT 
GGACGCCTGCGCGTGGACGGCCAGGTGGTGCGCGACGGCACCCACGAAGTGCGTGTCTTCAGCCGGGTGGAA 
CTGGACGAGCAGCTGCTCCAGGCTGGCAAGCCGGCGCGCTACTACATGCTGCATAAACCGATGGGCTGCGTC 
AGCGCCACCCGCGACCCGCAACACCCGACCGTCCTCGACCTGCTCCCGGAAGACCAGCGCGACGACCTGCAC 
ATTGGCGGTCGTCTCGACTACAACACCACCGGCCTGATGCTGCTGACCAACGACGGCCAGTGGTCGCGCCGC 
CTGACCCTGCCGGGCAGCCGGCGCGACAAGGTCTACTACGTGGAAACCGAGGCGCCCATCGACCAACGCTAC 
GTGGATGCCTTCGCCGCCGGCCTCCACTTCCGCTTCGAAGACCTGATCACCCTCCCCGCGCAGCTCGAACCG 
ATCGGCCCACGCTGCGCCCGCCTGACCCTGCACGAAGGCCGCTATCACCAGGTCAAGCGCATGTTCGGCCAC 
TTCGACAACAAGGTGCTGCGCCTGCACCGCGAGCGCATGGGCGATATTTGTCTCGACCCGCAGTTGCCGCCG 
GGTGCCTGGCGCCCCCTGAATGCTGAAGAAATCTGTTCGGTGTGA